Carassius gibelio (silver crucian carp): 127958691
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Entry
127958691 CDS
T08819
Name
(RefSeq) TNF receptor-associated factor 2-like isoform X1
KO
K03173
TNF receptor-associated factor 2 [EC:
2.3.2.27
]
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib04010
MAPK signaling pathway
cgib04137
Mitophagy - animal
cgib04141
Protein processing in endoplasmic reticulum
cgib04210
Apoptosis
cgib04217
Necroptosis
cgib04621
NOD-like receptor signaling pathway
cgib04622
RIG-I-like receptor signaling pathway
cgib04920
Adipocytokine signaling pathway
cgib05132
Salmonella infection
cgib05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
127958691
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
127958691
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
127958691
09143 Cell growth and death
04210 Apoptosis
127958691
04217 Necroptosis
127958691
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
127958691
04622 RIG-I-like receptor signaling pathway
127958691
09152 Endocrine system
04920 Adipocytokine signaling pathway
127958691
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
127958691
09171 Infectious disease: bacterial
05132 Salmonella infection
127958691
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgib03019
]
127958691
04121 Ubiquitin system [BR:
cgib04121
]
127958691
Enzymes [BR:
cgib01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
127958691
Messenger RNA biogenesis [BR:
cgib03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
127958691
Ubiquitin system [BR:
cgib04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
127958691
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
TRAF_BIRC3_bd
zf-TRAF
TRAF2_zf
zf-C3HC4
TRAF3_RING
TRAFD1-XIAF1_ZnF
ADIP
zf-C3HC4_2
zf-RING_5
zf-C3HC4_4
Paramyxo_NS_C
TMF_DNA_bd
zf-RING_UBOX
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
127958691
NCBI-ProteinID:
XP_052413615
LinkDB
All DBs
Position
B5:5010874..5078921
Genome browser
AA seq
546 aa
AA seq
DB search
MGMMCKAETKMISTAGTVGKWKAMARPSLPSSLDSTLPGISREVLSVSMEPKYQCQQCKE
ILRKPFQAQCGHRFCVFCFKQLTSLGPIPCEACRAEGIFEEATSMLNIAVAFPDNAARRE
IDSLPAKCPNDGCSWSGTLKEYEGQHEGRCDFERVKCEACQALILVSEKDRHNERECEAR
TLNCKYCKVTFIFKEIKAHDEICQKFPMQCKDCGKKKIPREKFQEHIKSCAKSKSACQFS
EIGCRAVVDSGKQQEHEQTSMTEHLRLMLAVLSSVRQRAEGTGEWQEDSGLGLYRGPEDA
SPLGAHAAGHNAGRGGGPGVQQKVTALENIVCVLNREVERSALTLEALSRQHRLDQEKIE
SLSNKVRQLERTLTMRDLQLAESEQSLRELQFCTYDGVFIWKIADFSRRRQDAVGGRAPA
MFSPAFYSSKYGYKMCLRLYLNGDGTGRGTHLSLFFVVMRGKYDALLKWPFSQKVTLMLL
DQNNREHIIDAFRPDVSSTSFQRPISEMNIASGCPLFCPLAKLAGKSSYLRDDTIFIKAI
VDLTGL
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atgggcatgatgtgtaaggctgagactaagatgatcagcactgctggcactgtgggtaaa
tggaaggcaatggcacgtccatctttaccttcttcattggactccacattacctgggata
tctcgagaagtgctgtctgtgtccatggaaccaaaatatcaatgtcagcagtgcaaagaa
attcttaggaaacctttccaagcacagtgtggacatcgcttctgtgtgttctgtttcaaa
caactcaccagcttggggcccataccatgcgaagcctgtcgtgctgagggtatatttgaa
gaggcaacatctatgctcaatattgcagtggcatttcctgataatgctgcacgaagggaa
attgatagcttgccagccaaatgcccaaatgatggatgtagttggtctggaacactgaaa
gagtatgagggtcaacatgaaggtcgttgtgactttgaacgtgtcaaatgtgaagcatgt
caagcactcatcttggtcagtgagaaagaccgccacaatgagcgggaatgcgaggccaga
accctgaactgcaaatactgcaaggtcacattcatcttcaaagaaattaaggcacatgat
gaaatatgtcagaaattccccatgcaatgcaaagactgtggtaaaaagaaaatccccaga
gagaagtttcaagagcacatcaagtcttgtgcaaagtctaagtcagcatgccagttcagt
gaaattggctgcagggcggtggttgacagtggtaagcagcaggagcatgagcagaccagc
atgacggaacatttgcgtctcatgctagccgtgctgtcctctgtgcgccagcgggcagag
gggacaggagagtggcaggaagattctggactgggattgtatcgtggacctgaagatgca
tctccattgggggctcatgctgctggccataatgcaggaagaggaggcggtcctggtgta
cagcagaaagtcacagcattggagaacatagtgtgtgtgttgaacagggaggtggagcga
tcggccctcaccctggaggcactatcccgtcaacatcggttagaccaggaaaagatagaa
agcttgtcaaacaaggtgcgacagctagaacggactttaaccatgcgagatctgcagtta
gcagaatctgaacagtccttgcgggagctgcagttttgtacatacgatggagttttcatt
tggaaaattgcagacttctctcgtcgcagacaagacgcagtggggggccgggcacctgcc
atgttctcacctgcgttctactccagtaaatatgggtataagatgtgtctgagactttac
ctgaatggtgacggcacaggccggggcactcatctgtctctattttttgtggtcatgagg
ggcaaatatgatgccttgctgaagtggccctttagccagaaggtgacattgatgttgttg
gaccagaacaacagagagcacatcattgatgcctttaggcctgacgtgagctccacatcc
ttccagagacccatcagtgagatgaacatagccagtggttgtcctctcttctgccctcta
gccaagctggcaggcaaaagctcatatctgagagatgacaccatatttattaaagccata
gttgacctcactggcttataa
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