Carassius gibelio (silver crucian carp): 127958692
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Entry
127958692 CDS
T08819
Name
(RefSeq) TNF receptor-associated factor 2-like isoform X1
KO
K03173
TNF receptor-associated factor 2 [EC:
2.3.2.27
]
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib04010
MAPK signaling pathway
cgib04137
Mitophagy - animal
cgib04141
Protein processing in endoplasmic reticulum
cgib04210
Apoptosis
cgib04217
Necroptosis
cgib04621
NOD-like receptor signaling pathway
cgib04622
RIG-I-like receptor signaling pathway
cgib04920
Adipocytokine signaling pathway
cgib05132
Salmonella infection
cgib05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
127958692
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
127958692
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
127958692
09143 Cell growth and death
04210 Apoptosis
127958692
04217 Necroptosis
127958692
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
127958692
04622 RIG-I-like receptor signaling pathway
127958692
09152 Endocrine system
04920 Adipocytokine signaling pathway
127958692
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
127958692
09171 Infectious disease: bacterial
05132 Salmonella infection
127958692
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgib03019
]
127958692
04121 Ubiquitin system [BR:
cgib04121
]
127958692
Enzymes [BR:
cgib01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
127958692
Messenger RNA biogenesis [BR:
cgib03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
127958692
Ubiquitin system [BR:
cgib04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
127958692
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
TRAF_BIRC3_bd
zf-TRAF
TRAF2_zf
zf-C3HC4
TRAF3_RING
TRAFD1-XIAF1_ZnF
ADIP
zf-C3HC4_2
zf-RING_5
zf-C3HC4_4
TMF_DNA_bd
Paramyxo_NS_C
zf-RING_UBOX
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
127958692
NCBI-ProteinID:
XP_052413620
LinkDB
All DBs
Position
B5:complement(4316896..4358288)
Genome browser
AA seq
536 aa
AA seq
DB search
MISTAGTVGKWKAMARPSLPSSLDSTLPGISREVLSVSMEPKYQCQQCKEILRKPFQAQC
GHRFCVFCFKQLTSLGPIPCEACRAEGIFEEATSMLNIAVAFPDNAARREIDSLPAKCPN
DGCSWSGTLKEYEGQHEGRCDFERVKCEACQALILVSEKDRHNERECEARTLNCKYCKVT
FIFKEIKAHDEICQKFPMQCKDCGKKKIPREKFQEHIKSCAKSKSACQFSEIGCRAVVDS
GKQQEHEQTSMTEHLRLMLAVLSSVRQRAEGTGEWQEDSGLGLYRGPEDASPLGAHAAGH
NAGRGGGPGVQQKVTALENIVCVLNREVERSALTLEALSRQHRFDQEKIESLSNKVRQLE
RTLTMRDLQLAESEQSLRELQFCTYDGVFIWKIADFSRRRQDAVGGRAPAMFSPAFYSSK
YGYKMCLRLYLNGDGTGRGTHLSLFFVVMRGKYDALLKWPFSQKVTLMLLDQNNREHIID
AFRPDVSSTSFQRPISEMNIASGCPLFCPLAKLAGKSSYLRDDTIFIKAIVDLTGL
NT seq
1611 nt
NT seq
+upstream
nt +downstream
nt
atgatcagcactgctggcactgtgggtaaatggaaggcaatggcacgtccatctttacct
tcttcattggactccacattacctgggatatctcgagaagtgctgtctgtgtccatggaa
ccaaaatatcaatgtcagcagtgcaaagaaattcttaggaaacctttccaagcacagtgt
ggacatcgcttctgtgtgttctgtttcaaacaactcaccagcttggggcccataccatgc
gaagcctgtcgtgctgagggtatatttgaagaggcaacatctatgctcaatattgcagtg
gcatttcctgataatgctgcacgaagggaaattgatagcttgccagccaaatgcccaaat
gatggatgtagttggtctggaacactgaaagagtatgagggtcaacatgaaggtcgttgt
gactttgaacgtgtcaaatgtgaagcatgtcaagcactcatcttggtcagtgagaaagac
cgccacaatgagcgggaatgcgaggccagaaccctgaactgcaaatactgcaaggtcaca
ttcatcttcaaagaaattaaggcacatgatgaaatatgtcagaaattccccatgcaatgc
aaagactgtggtaaaaagaaaatccccagagagaagtttcaagagcacatcaagtcttgt
gcaaagtctaagtcagcatgccagttcagtgaaattggctgcagggcggtggttgacagt
ggtaagcagcaggagcatgagcagaccagcatgacggaacatttgcgtctcatgctagcc
gtgctgtcctctgtgcgccagcgggcagaggggacaggagagtggcaggaagattctgga
ctgggattgtatcgtggacctgaagatgcatctccattgggggctcatgctgctggccat
aatgcaggaagaggaggcggtcctggtgtacagcagaaagtcacagcattggagaacata
gtgtgtgtgttgaacagggaggtggagcgatcggccctcaccctggaggcactatcccgt
caacatcggtttgaccaggaaaagatagaaagcttgtcaaacaaggtgcgacagctagaa
cggactttaaccatgcgagatctgcagttagcagaatctgaacagtccttgcgggagctg
cagttttgtacatacgatggagttttcatttggaaaattgcagacttctctcgtcgcaga
caagacgcagtggggggccgggcacctgccatgttctcacctgcgttctactccagtaaa
tatgggtataagatgtgtctgagactttacctgaatggtgacggcacaggccggggcact
catctgtctctattttttgtggtcatgaggggcaaatatgatgccttgctgaagtggccc
tttagccagaaggtgacattgatgttgttggaccagaacaacagagagcacatcattgat
gcctttaggcctgacgtgagctccacatccttccagagacccatcagtgagatgaacata
gccagtggttgtcctctcttctgccctctagccaagctggcaggcaaaagctcatatctg
agagatgacaccatatttattaaagccatagttgacctcactggcttataa
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