Carassius gibelio (silver crucian carp): 127970783
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Entry
127970783 CDS
T08819
Name
(RefSeq) antiviral innate immune response receptor RIG-I-like
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib04622
RIG-I-like receptor signaling pathway
cgib04623
Cytosolic DNA-sensing pathway
cgib05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
127970783
04623 Cytosolic DNA-sensing pathway
127970783
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
127970783
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
cgib04054
]
127970783
Enzymes [BR:
cgib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
127970783
Pattern recognition receptors [BR:
cgib04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
127970783
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIG-I_C
RIG-I_C-RD
CARD_2
ResIII
DEAD
Helicase_C
SNF2-rel_dom
PhoH
ERCC3_RAD25_C
AAA_19
AAA
ATP-synt_ab
Motif
Other DBs
NCBI-GeneID:
127970783
NCBI-ProteinID:
XP_052429478
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All DBs
Position
B13:284868..298704
Genome browser
AA seq
903 aa
AA seq
DB search
MVESILSTEMTSVTTAAQMLLDQMYYLEEVGWFQAFLDTLLASEYTGLHDAIKEWDFKKL
EELNEHRRFLERIEPSITKHMKPSELLAHMNGCLKPRECEEIRAEESQRGRIAASEKLVM
SLLRSDKPNWFKLLKIALENCDLDEARDMLETNGGGVEVKAGEWDGEAEDVMTTVCFEFR
EEAETEDVLLSLNNLTVTEEPGGFTGKPERSGERKLREYQKELTAAAVQGQNTIICAPTG
CGKTIVALAICEYHLKQFPERAKIVFLATKVEVYEQQYKLFKEHFSSKDPNVRVTGMCGD
MDHVPVPSLIENNDIVVMTAQILVNALQSAEVPSLEILSLILFDECHNTTGKHPYNNIMT
RYLDTKLSSSTHSLPQIVGLTASVGIGSFKNGLEAENNILQLCANLDTRVITTVTQHKDE
LKSYVHTPEKMFFEVQQCTSHPFIRIIKNIMSNIEQLAQKTFNIENLSNIQNREYGSQKY
EQWIVSVQKSCKVLQMKNADEERRICRDLYNYTEHLRKYNDALIINEDARTKDALDYLDA
FFDQVRNAGYGETERKLTALYDCQRPQLLRLATEGEQNPKLDELKFILEEEYHNNDQTRT
VMFVKTRALADAMKKWIDETDSLKFLKPGVLIGKGRKSNFTGSGMTPNNQRGILESFKSS
DQSKMLIATSVADEGIDIPQCNLVLMYEYVGNVVKMVQVRGRGRAEGSRCFLISSNKERI
AKEKINMFKEKMVEEAIEQLQSRPADLRNKVDMLQREDKARRDHISASPEKPKTQGSYEL
LCCKCKRFACRSDDIRVVQGAHHIVLDRSMFERCTTAPHKNPRSFSGFCKKEKMLCAECK
QDWGLIASYLTIQDLPLVKIESYVVQDCVTGRQQYFRKWRDVTFAMREFDMTEITAETWR
PRD
NT seq
2712 nt
NT seq
+upstream
nt +downstream
nt
atggtggagagcattctctctacagagatgacgtctgtgaccacagctgcccagatgctg
ctggaccagatgtattatctagaggaagtgggctggtttcaagcttttctggacaccctg
ctggcctcggagtacaccggactgcacgacgccattaaagagtgggacttcaagaagtta
gaggagctgaacgaacacaggagatttctggaaaggatcgaaccgtcaatcacgaagcac
atgaagcccagcgagctgctcgcgcacatgaacggctgtctgaagcccagagagtgtgag
gagatccgggcggaggagagtcagcgcggtcgtatcgctgccagtgagaaactggtgatg
agtctcctgcgctcagacaaacccaactggttcaaactgctgaagatcgctctggaaaac
tgtgacttagacgaggctcgagacatgctggagacaaatggaggaggtgtggaggtgaag
gccggtgaatgggacggagaggcggaggacgtgatgacgaccgtgtgctttgagttcaga
gaggaggccgagactgaagacgtgctgctgagcctcaacaacctcacggtcacagaggaa
cctggcggcttcacagggaaacctgagcgatcaggtgagcgcaagctgagagaataccag
aaggagctgaccgccgcggccgtccagggccagaacaccatcatctgcgctcccacagga
tgtggaaaaaccatagtggccctggccatctgtgaatatcacctgaagcagtttcctgaa
agagcaaagatcgtgtttctggcgaccaaggtcgaagtctatgaacagcagtacaaactt
ttcaaggagcacttttccagcaaggatcccaacgtcagggtgacggggatgtgtggtgat
atggaccatgtgcccgtgcccagcctcatagagaataatgatattgtggtgatgacggct
cagatcctggtgaacgcgctgcagagcgctgaggtgccgtctctggagatcctgtcactc
atcctgttcgacgagtgtcacaacacgaccggaaaacacccctacaacaacatcatgacc
cgctacctggacaccaaactctccagcagcacacactcactgccacagattgtgggcctg
accgcgtcggtcggcatcggttcattcaagaacggactggaggcagagaacaacatctta
cagctctgtgccaacctggacaccagggtcatcaccacagtcacccagcacaaggatgag
ctcaagtcatacgtgcacacgcctgagaaaatgttttttgaggttcaacagtgcacgagt
caccccttcatcagaataatcaaaaacatcatgagtaacatcgagcagctggcgcagaag
accttcaacatcgagaacctgtcgaacatccagaaccgcgagtacggctcgcagaaatat
gagcaatggatcgtctctgttcaaaagagctgcaaagtcttacagatgaagaacgcagac
gaagagagacgcatctgcagagatctctacaactacactgaacacctgcggaaatataac
gatgctctgatcatcaatgaagacgcgcggactaaagatgcgctggattatctggacgcg
ttctttgatcaggtccgaaacgccggctacggcgagaccgagaggaagctgaccgcgctc
tacgactgtcagcggccgcagttactgcgtctggccaccgagggggagcagaaccctaaa
ctcgatgagctgaagttcatcctggaggaagaataccacaataacgatcagacgcgcacc
gtcatgttcgtcaagacacgagccctcgccgacgccatgaagaaatggatcgacgagact
gattccctgaagttcctgaagcctggagtcctgattggaaaaggacggaaatccaacttt
actggatcaggaatgactccgaacaatcagagggggattctggaatcctttaagagctct
gatcagagcaagatgctcatcgccacatcggtcgctgatgaaggcatcgatatcccacag
tgcaacttggttctgatgtatgaatatgtgggaaatgtggtaaagatggtgcaagttcga
ggtcgtggtcgagcggagggcagccggtgtttcctgatctccagtaataaggagcgcatt
gcgaaggagaaaataaacatgtttaaggagaagatggtggaggaggccatcgagcagctg
cagagccgccccgccgacctcagaaacaaggtggacatgttgcagagggaagacaaagcc
cggagggatcacatcagtgccagtcccgaaaaacccaaaacccagggcagttacgagctc
ctctgctgcaagtgcaagaggtttgcatgcaggagtgacgacatcagagtcgtgcagggc
gctcatcacatcgttctggatcgctcaatgttcgagcgctgtacaactgctccccataag
aacccaagatccttctcgggcttctgtaagaaagagaagatgctctgtgccgagtgcaag
caggactggggtctcatcgcctcgtacctcaccatccaggatctgccgctggtgaagatc
gagagctacgtggtgcaggattgtgtcaccggcagacagcagtacttcaggaagtggcgt
gacgttacgtttgccatgcgtgagtttgacatgacggagatcacggctgagacgtggcgg
ccgagagactga
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