Carassius gibelio (silver crucian carp): 127975816
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Entry
127975816 CDS
T08819
Name
(RefSeq) interferon regulatory factor 5-like
KO
K09446
interferon regulatory factor 5
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib04620
Toll-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
127975816
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cgib03000
]
127975816
Transcription factors [BR:
cgib03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters interferon-regulating factors
127975816
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IRF-3
IRF
Motif
Other DBs
NCBI-GeneID:
127975816
NCBI-ProteinID:
XP_052435774
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All DBs
Position
A4:27911880..27919354
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AA seq
508 aa
AA seq
DB search
MSGHPRRIRLKPWLLAQINSGKYPGLQWLNQERRLFRIPWRHATRHMPTLEEENTIFKAW
ALETGKYQEGVDEPDPAKWKANLRCALNKSREFGLHYDGTKDTPVQPYKIYEVCDQSVNG
DAGDDEEEELQHFVKLSIDPSSYPAYPSRVDDPFNSTIADGYNPTHHNPPMNLLRDVVHN
NPSGGGPMSSHLSQPNTGPSAGAIKVEQASYPCGGLSNGLGMGTGVIPPPLLQDVVTHSV
GPQAMVDSPMQEVPVQAENQVHPCISELLSSPHMLPLTDLDVKFQYRGRTTGSLTVSNPQ
GCRLYYGNLAPTPEQVELFGPVTLQQVLFPGTAEIQNEKQRFYTDHLLDVMDRGLILEIR
GQDIYAIRLCQCKVFWSGPGVLEQGPPNPMEREMKIRVFSLNNFLHGLILYQKGEAPTPP
PFEIYFCFGEDWPDRKPKEKKLIVVQVVPVVARILTEMFSGELSWSTDSIRLQISNPDLK
DQTVEQFKELHRLLQSQNAHHTWAQNIQ
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atgagtggtcatccacggaggatccgtctgaagccgtggctgctggcacagattaacagt
gggaaatacccaggactgcaatggctcaatcaagagcgcagactgttccggatcccttgg
agacatgccacccgccatatgcctaccctggaggaggagaacactatatttaaggcttgg
gctctcgaaacaggcaagtatcaggaaggagtagatgagccagatccagcaaaatggaaa
gccaatctccgctgtgccctaaacaaaagccgagagttcggactccactacgatggcact
aaggacaccccggtccagccttataagatctatgaggtgtgcgaccaatcagtcaatgga
gatgccggagacgatgaggaagaggagttgcagcactttgtcaaactctccattgaccct
tccagctacccagcatacccttctagagtagatgatccgtttaactctactattgctgat
ggctataatcccacccaccataaccctccgatgaacctcttaagagatgttgtccataat
aaccccagtggaggtggtcctatgtcctctcacctctcccagcccaacactggaccttcg
gctggtgcaatcaaagttgagcaggcatcatatccctgtgggggactttcgaacggtctg
ggaatggggactggagtcataccgccgcctcttcttcaagatgtagtcactcattctgta
ggccctcaagccatggtggacagcccaatgcaagaggtgccagttcaagcagagaaccag
gttcatccctgcatctcagagttgctgagcagtccgcacatgttacccttaactgatcta
gatgtcaagttccagtacaggggtcggacaactggttctttaactgtcagcaaccctcag
ggttgtagactttactacggtaatctggcacccacaccagagcaagtagagctatttggt
ccggtaacgctgcagcaggtgctgttcccaggaaccgctgagatccagaatgagaagcag
aggttctatactgatcatctgctggatgtgatggaccgagggctgattttggagatcaga
ggacaagatatctacgcaatcaggctgtgccagtgtaaagtgttctggtccgggccaggt
gtgctcgagcagggtccacccaatccaatggaaagagaaatgaagatcagggtcttcagt
ctgaacaactttctccatggtctcattttgtatcagaaaggagaggcgcccactccacca
ccctttgagatctacttctgcttcggtgaggactggccagacaggaagcccaaggagaaa
aagctcatcgtagtccaggttgttccagttgttgcaagaatccttacagagatgttttca
ggcgagctttcgtggtccacagacagcattcggttgcagatctccaaccctgacctgaaa
gaccaaacggtggagcagttcaaagagctccacagactgttgcaaagtcaaaatgcgcac
cacacctgggctcaaaacatccaataa
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