Carassius gibelio (silver crucian carp): 127976391
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Entry
127976391 CDS
T08819
Name
(RefSeq) TNF receptor-associated factor 3
KO
K03174
TNF receptor-associated factor 3
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib04620
Toll-like receptor signaling pathway
cgib04621
NOD-like receptor signaling pathway
cgib04622
RIG-I-like receptor signaling pathway
cgib05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
127976391
04621 NOD-like receptor signaling pathway
127976391
04622 RIG-I-like receptor signaling pathway
127976391
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
127976391
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
zf-TRAF
TRAF3_RING
zf-C3HC4_2
zf-C3HC4
EzrA
RING_XB3-XBAT31
zf-TRAF_2
Crescentin
Sina_ZnF
Spectrin_Anc-1
zf-rbx1
zf-RING_UBOX
zf-RING_2
FPP
BLOC1_2
zf-RING_4
FapA
zf-RING_6
Laminin_II
Exonuc_VII_L
DUF2203
ATG16
Motif
Other DBs
NCBI-GeneID:
127976391
NCBI-ProteinID:
XP_052436740
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All DBs
Position
B17:14988735..15004758
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AA seq
570 aa
AA seq
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MSAGRNVEQQIALQQRPPSLAMPSMAQRPRAEPGFLPQHGGFRDHFVTTPEAKYRCESCR
LVLCSPRQTECGHRFCESCITDLLSKPNPICPADLEPLFEDKIFRDVCCNREIMALKVYC
RSEKNGCKEQMSLQQVMDHLEVCPYFEVPCPLGKCKEKMMRKDMSEHLSRKCKHREITCE
FCNHKMALTELQKHKDTVCPAFPVACPNHCSFSSILRSELSSHQHDCPKAQVTCSFIRYG
CSFKGLNQAMREHESSFASEHLRMMAVRNTTLEAKVEDVKSELMERYKVLPSLSSRLAEV
ETQYEEMREKNRQLEQKLVSMQMLMSSHSEKLLEVEMELRELRAMREEVEALRGSVENMR
SIVSSLDPGRVGSSSGSHTLGSLEQQLSRHDDLMSVHDIRLAEMDLKLQVLETASFNGTL
IWKIRDYKRRKQEAVASKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVVM
RGEYDALLPWPFKQKVTLMLMDQGPARKHLGDAFKPDPNSSSFRRPTAEMNIASGCPLFV
AQTILENGTYIKDDTIFIKVTVDTSDLPDP
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcagggcgtaatgtggaacagcagattgccctgcagcagcgtcctccatctctt
gccatgccctccatggcccagcggcccagggcagagccaggcttcttaccccagcacggt
ggatttagggaccacttcgtcacgacgcccgaggccaagtatcgctgcgagtcttgcagg
cttgtgctctgttcccctcgccaaacggagtgtggacatcgcttctgcgagagctgcatc
acagacctgctcagtaagcccaacccaatttgtccagctgatctagaaccactctttgaa
gataagatattccgggatgtttgctgcaacagggaaattatggctctgaaagtctactgc
cgaagtgagaaaaatggatgtaaagaacaaatgagtttacagcaggtcatggaccacttg
gaagtttgtccgtacttcgaggtgccatgccccttgggaaagtgtaaggagaagatgatg
aggaaagacatgtctgagcacttgagccgcaaatgcaaacaccgagagatcacctgtgaa
ttctgcaatcacaagatggccctcaccgagttacagaaacacaaagatacagtctgtcct
gcgtttcctgtagcatgccctaatcactgctccttttcttccattctaagaagtgagctt
tccagtcatcagcatgactgtccaaaggctcaagtgacctgctcctttattcgctacgga
tgctcctttaaggggctgaatcaagcgatgagggaacatgagtccagttttgcgtccgag
cacctgagaatgatggcagtcagaaacaccacgctagaagccaaggtagaggatgttaag
agcgagctgatggagcgttataaagtcctgcccagcctcagcagtcgtctggcagaggtt
gagactcagtatgaggagatgagagagaagaacaggcagctggagcagaagctagtcagc
atgcagatgctgatgagctctcactcagagaaacttcttgaggtcgagatggagctgcgg
gagctgcgagccatgagggaggaggtggaggctctgagaggctccgtggagaacatgcgt
tcaattgtatcttctctcgacccgggtcgtgttggttccagttctggatctcacacgctg
ggctccttagagcagcagctctcccgtcacgatgacctgatgagtgtccatgacatccgc
ctggcggagatggacctgaagctgcaggtgctagagacggccagcttcaacggtacgctc
atttggaagatccgtgactacaaaagacggaaacaggaagccgtggcctcaaaaactctc
tcgctctacagccagcccttctacacgggctatttcggctacaagatgtgtgcccgcgtc
tatctgaatggagacggaatgggtaaaggcacccatctctcgctgttcttcgtggtcatg
cgtggggaatacgatgccttgctgccgtggccgttcaaacagaaagtaacattaatgcta
atggaccaggggccggcaaggaaacacttaggcgatgcatttaaaccggacccaaatagc
agtagctttcgccggcccactgctgaaatgaacatcgcctcgggctgtccactctttgtg
gctcaaactatcctggagaacggaacctacatcaaagacgacaccatcttcattaaggtg
actgtagacacctccgacctcccggacccttga
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