KEGG   Carassius gibelio (silver crucian carp): 127976786
Entry
127976786         CDS       T08819                                 
Name
(RefSeq) thrombospondin-1-like
  KO
K16857  thrombospondin 1
Organism
cgib  Carassius gibelio (silver crucian carp)
Pathway
cgib04115  p53 signaling pathway
cgib04145  Phagosome
cgib04148  Efferocytosis
cgib04350  TGF-beta signaling pathway
cgib04510  Focal adhesion
cgib04512  ECM-receptor interaction
cgib04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:cgib00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04350 TGF-beta signaling pathway
    127976786
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    127976786
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    127976786
   04148 Efferocytosis
    127976786
  09143 Cell growth and death
   04115 p53 signaling pathway
    127976786
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    127976786
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    127976786
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:cgib04131]
    127976786
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:cgib00536]
    127976786
Membrane trafficking [BR:cgib04131]
 Endocytosis
  Phagocytosis
   Opsonins
    127976786
Glycosaminoglycan binding proteins [BR:cgib00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   127976786
SSDB
Motif
Pfam: TSP_C TSP_3 TSP_1 TSP1_spondin VWC TSP1_CFP_C EGF_3 TSP1_ADAMTS cEGF EGF TSP1_CCN Laminin_G_2
Other DBs
NCBI-GeneID: 127976786
NCBI-ProteinID: XP_052437411
LinkDB
Position
B17:28836563..28846853
AA seq 1175 aa
MMALRGLVLCLFLWSSVSSRRIEMPDDDTVFDLFELTDVDKKHHGVSLVKGPDPNSPAYK
ILNPNLIPSVPELSFRDLVYSIQSERGFIFTANLKQAKRTRGSLVSVERTDGTGSVFEII
SNGKANTVDLVYWTESGQHVVSIEDVNVANGHWKNITVFVQEDRAQVHVGCEEINTQELD
APIQQILNQESADISSLRIAKGAAKTDRFLGVLQNVRFVFGTTLDAILRNKGCESSSFIT
DVITFENPMNGSSPAIRTDYTGHKSKDLQDICGFSCDDLSSMFKELKGLGMVVKQLSNEL
RQVTADNSLIMTQIKIHEGVCLHNGIVHRDKDEWTVDSCTHCTCQNSATVCREISCPLMP
CANATVPDGECCPRCGTPIDAGVDGWSPWSEWTHCSVTCGRGIQQRGRSCDRINSNCDGT
SVQTRDCYMQECDKRFKQDGGWSHWSPWASCSVTCGEGIITRIRLCNSPTPQMGGRDCEG
DGRQTEPCQKDPCPVNGGWGPWSPWDSCSITCGGGLQRRHRLCNSPAPKYGGKECMGDSK
ATRLCNAQSCPVDGCLSNPCFAGTKCTSFPDGSWKCGECPIGYTGDGVHCQDIDECKEVP
DACFVLNGVHQCVNTEPGYNCLPCPPRYSGLQPFGRGTEQAIANKQVCIPRNPCEDGTHE
CNKNANCIYLGIFSDIMYRCECKPGYAGNGYICGGDSDLDGWPNTDLHCVENATYHCKKD
NCPDLPNSGQEDYDKDGTGDACDNDDDNDGIPDEGDNCPFVFNPRQFDHDRDQVGDRCDN
CPYDSNPEQTDTDNNGEGDACAIDIDGDGILNEKDNCPYVYNTDQRDNDGDGVGDHCDNC
PLEHNPDQIDSDSDNIGDKCDNNQDIDEDGHQNNLDNCPYIPNANQVDHDKDGKGDACDH
DDDNDGVPDEKDNCRLAFNPDQLDSDGDGRGDICKDDFDVDNVPDIDDICPENFGISETD
FRRFQMVPLDPTGTSQIDPNWVVRHQGKELLQTVNCDPGIAVGYDEFNAVDFSGTFFINT
DRDDDYAGFVFGYQSSSRFYVVMWKQITQTYWSHTPTKAQGYSGLSIKVVNSTTGPGEHL
RNALWHTGDTEGQVRTLWHDPKNIGWKDYTAYRWHLIHRPKTGHIRVIMYEGKKVLADSG
SINDKTYAGGRLGLFVFSQEMVYFSDLKYECRDAS
NT seq 3528 nt   +upstreamnt  +downstreamnt
atgatggctctgagaggactcgttttgtgcctcttcttgtggagttccgtgagcagcaga
cgcatagaaatgccggatgatgacaccgtgttcgacctgttcgagctcactgatgtcgac
aagaagcatcacggggtgagcttagtgaagggacccgatccaaacagccccgcgtacaag
atcctgaacccgaacctgatcccctcggtgcccgagctctccttcagggacctggtgtac
tccatccagagcgagagaggcttcatcttcaccgccaacctgaagcaagccaagcgcacc
aggggcagcctggtctccgtggagaggaccgacggcaccggatccgtctttgagatcatc
tccaacgggaaagccaacaccgtggatctggtgtactggaccgagagcggacagcacgtg
gtgtccatcgaggacgtgaacgtggcgaacggacactggaagaacatcacggtgtttgtg
caggaggatcgagctcaggttcacgtgggctgtgaggagatcaacactcaagagctcgat
gctccgatccagcagatcctgaatcaggagagcgcggacatctcgagcctgaggatcgcc
aaaggagccgccaaaaccgatcgctttctgggagttctccagaacgtgcggtttgttttt
ggaacgacgctggacgcgattttacgcaataaaggatgcgagagctcatccttcatcact
gatgtcatcacctttgaaaaccccatgaacggatccagcccggccatccgcactgattac
accggacacaagtctaaagatctgcaggacatctgcggtttctcttgcgacgatctgtcc
agcatgtttaaggagctcaagggactcggcatggtggtgaagcaattgtcaaacgagctc
cgccaagtgacagcagacaacagcttaatcatgactcagattaaaatccacgaaggagtt
tgtctacacaatggcattgttcaccgagacaaagacgagtggacggtggacagctgcaca
cactgtacatgtcagaactccgccactgtgtgccgtgaaatctcctgtcctctcatgccc
tgtgccaacgctactgtccccgacggcgaatgctgcccacgctgcggaacaccgattgat
gcgggtgtggatggctggtcaccctggtccgaatggacacactgttctgtgacctgtggc
agaggcattcagcagcgcggacgctcttgtgaccgaatcaatagcaactgcgacggcaca
tctgtccagacgagagactgttacatgcaagaatgcgacaaacgcttcaagcaggatggc
ggctggagccactggtccccctgggcttcttgctcagtgacatgtggtgagggcatcatc
actcgaatccggttgtgcaactcccctacgcctcagatgggcgggagagactgcgaggga
gacggtcgtcagacagagccatgccagaaggacccgtgcccagtgaatggaggttgggga
ccctggtcaccatgggactcttgctccatcacgtgcggtggaggactgcagcgcagacac
cgtctgtgtaacagccccgctcccaaatacggtggaaaagaatgtatgggtgactccaaa
gcaacccgtttgtgcaacgcccagtcttgtccagttgatggatgcctgtctaacccgtgc
ttcgccggcaccaaatgcaccagcttccccgatggctcctggaagtgcggcgagtgtccg
attggatacactggggatggagtccactgtcaagatatcgacgagtgcaaagaagttcct
gatgcctgttttgtgctgaatggagtccatcagtgtgtgaacacagaaccaggctacaac
tgcctgccctgccctccacgctactctggactgcagcccttcggcaggggaacagagcag
gccattgccaacaaacaggtctgcatacctagaaacccatgcgaggacggcacccatgaa
tgcaataagaatgccaactgcatctacctgggcatcttctctgacatcatgtaccgctgc
gaatgtaaaccaggctacgctgggaatggttacatctgtggaggggactctgaccttgac
ggctggccaaacacagacctccactgtgtggaaaacgccacctaccactgcaagaaggac
aactgtcctgaccttcccaactctggtcaagaagactatgataaagatggaactggagat
gcttgtgataatgatgatgacaatgatgggatccctgatgaaggggacaattgcccgttc
gtcttcaacccaagacagtttgaccatgaccgcgatcaagttggtgacagatgcgataat
tgcccatatgacagtaatccagaacagaccgacaccgacaacaatggcgagggtgatgcg
tgtgccattgacatcgatggtgatggcatcctgaatgagaaggacaactgtccatatgtg
tacaacactgaccagagagacaatgatggagacggagtcggtgaccactgtgacaactgc
ccactggagcacaaccctgaccagatcgactctgactctgacaacattggagacaagtgt
gacaacaaccaggacatcgatgaggatggacatcagaacaaccttgacaactgtccctac
attcccaacgccaaccaggtcgaccacgacaaggacgggaaaggagacgcctgtgatcac
gatgatgataatgatggcgtgcctgatgaaaaagacaactgccgacttgccttcaaccca
gatcaactggattcggacggagacggacgaggcgacatttgcaaggatgactttgatgtc
gacaatgtgccagatattgacgacatctgcccagagaacttcggtatcagtgaaacagac
ttccgtaggttccaaatggttcctctcgatcccaccggaacttcccaaatcgaccccaac
tgggtcgtgcgtcaccagggcaaagaacttctgcagacggtcaactgtgatcctggcatc
gctgttggttatgatgagttcaatgctgtggactttagcggcacgttcttcatcaacaca
gaccgtgacgacgactacgccggctttgtgtttggctaccaatctagctcacgtttctac
gtggtgatgtggaaacagatcacacagacctactggtctcatacacccactaaagcacag
gggtactctggactgtccattaaagtagtgaactcgaccacaggaccaggcgaacacctc
aggaatgctttgtggcacactggagacacggagggacaagtgcgcaccctgtggcatgat
cccaagaacattggctggaaggattacaccgcctacagatggcacctgatccacagacca
aaaaccggacacatcagagtgattatgtatgaaggcaagaaagtcttggctgattcagga
agcatcaatgacaagacatatgcgggaggaagacttggcctatttgtcttctctcaagag
atggtttacttctcagacctcaaatacgaatgccgagatgcatcttaa

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