Entry |
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Name |
(RefSeq) thrombospondin-1-like
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KO |
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Organism |
cgib Carassius gibelio (silver crucian carp)
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Pathway |
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Brite |
KEGG Orthology (KO) [BR:cgib00001]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
127976786
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
127976786
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
127976786
04148 Efferocytosis
127976786
09143 Cell growth and death
04115 p53 signaling pathway
127976786
09144 Cellular community - eukaryotes
04510 Focal adhesion
127976786
09142 Cell motility
04820 Cytoskeleton in muscle cells
127976786
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:cgib04131]
127976786
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:cgib00536]
127976786
Membrane trafficking [BR:cgib04131]
Endocytosis
Phagocytosis
Opsonins
127976786
Glycosaminoglycan binding proteins [BR:cgib00536]
Heparan sulfate / Heparin
Extracellular matrix molecules
127976786
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SSDB |
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Motif |
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Other DBs |
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LinkDB |
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Position |
B17:28836563..28846853
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AA seq |
1175 aa
MMALRGLVLCLFLWSSVSSRRIEMPDDDTVFDLFELTDVDKKHHGVSLVKGPDPNSPAYK
ILNPNLIPSVPELSFRDLVYSIQSERGFIFTANLKQAKRTRGSLVSVERTDGTGSVFEII
SNGKANTVDLVYWTESGQHVVSIEDVNVANGHWKNITVFVQEDRAQVHVGCEEINTQELD
APIQQILNQESADISSLRIAKGAAKTDRFLGVLQNVRFVFGTTLDAILRNKGCESSSFIT
DVITFENPMNGSSPAIRTDYTGHKSKDLQDICGFSCDDLSSMFKELKGLGMVVKQLSNEL
RQVTADNSLIMTQIKIHEGVCLHNGIVHRDKDEWTVDSCTHCTCQNSATVCREISCPLMP
CANATVPDGECCPRCGTPIDAGVDGWSPWSEWTHCSVTCGRGIQQRGRSCDRINSNCDGT
SVQTRDCYMQECDKRFKQDGGWSHWSPWASCSVTCGEGIITRIRLCNSPTPQMGGRDCEG
DGRQTEPCQKDPCPVNGGWGPWSPWDSCSITCGGGLQRRHRLCNSPAPKYGGKECMGDSK
ATRLCNAQSCPVDGCLSNPCFAGTKCTSFPDGSWKCGECPIGYTGDGVHCQDIDECKEVP
DACFVLNGVHQCVNTEPGYNCLPCPPRYSGLQPFGRGTEQAIANKQVCIPRNPCEDGTHE
CNKNANCIYLGIFSDIMYRCECKPGYAGNGYICGGDSDLDGWPNTDLHCVENATYHCKKD
NCPDLPNSGQEDYDKDGTGDACDNDDDNDGIPDEGDNCPFVFNPRQFDHDRDQVGDRCDN
CPYDSNPEQTDTDNNGEGDACAIDIDGDGILNEKDNCPYVYNTDQRDNDGDGVGDHCDNC
PLEHNPDQIDSDSDNIGDKCDNNQDIDEDGHQNNLDNCPYIPNANQVDHDKDGKGDACDH
DDDNDGVPDEKDNCRLAFNPDQLDSDGDGRGDICKDDFDVDNVPDIDDICPENFGISETD
FRRFQMVPLDPTGTSQIDPNWVVRHQGKELLQTVNCDPGIAVGYDEFNAVDFSGTFFINT
DRDDDYAGFVFGYQSSSRFYVVMWKQITQTYWSHTPTKAQGYSGLSIKVVNSTTGPGEHL
RNALWHTGDTEGQVRTLWHDPKNIGWKDYTAYRWHLIHRPKTGHIRVIMYEGKKVLADSG
SINDKTYAGGRLGLFVFSQEMVYFSDLKYECRDAS |
NT seq |
3528 nt +upstreamnt +downstreamnt
atgatggctctgagaggactcgttttgtgcctcttcttgtggagttccgtgagcagcaga
cgcatagaaatgccggatgatgacaccgtgttcgacctgttcgagctcactgatgtcgac
aagaagcatcacggggtgagcttagtgaagggacccgatccaaacagccccgcgtacaag
atcctgaacccgaacctgatcccctcggtgcccgagctctccttcagggacctggtgtac
tccatccagagcgagagaggcttcatcttcaccgccaacctgaagcaagccaagcgcacc
aggggcagcctggtctccgtggagaggaccgacggcaccggatccgtctttgagatcatc
tccaacgggaaagccaacaccgtggatctggtgtactggaccgagagcggacagcacgtg
gtgtccatcgaggacgtgaacgtggcgaacggacactggaagaacatcacggtgtttgtg
caggaggatcgagctcaggttcacgtgggctgtgaggagatcaacactcaagagctcgat
gctccgatccagcagatcctgaatcaggagagcgcggacatctcgagcctgaggatcgcc
aaaggagccgccaaaaccgatcgctttctgggagttctccagaacgtgcggtttgttttt
ggaacgacgctggacgcgattttacgcaataaaggatgcgagagctcatccttcatcact
gatgtcatcacctttgaaaaccccatgaacggatccagcccggccatccgcactgattac
accggacacaagtctaaagatctgcaggacatctgcggtttctcttgcgacgatctgtcc
agcatgtttaaggagctcaagggactcggcatggtggtgaagcaattgtcaaacgagctc
cgccaagtgacagcagacaacagcttaatcatgactcagattaaaatccacgaaggagtt
tgtctacacaatggcattgttcaccgagacaaagacgagtggacggtggacagctgcaca
cactgtacatgtcagaactccgccactgtgtgccgtgaaatctcctgtcctctcatgccc
tgtgccaacgctactgtccccgacggcgaatgctgcccacgctgcggaacaccgattgat
gcgggtgtggatggctggtcaccctggtccgaatggacacactgttctgtgacctgtggc
agaggcattcagcagcgcggacgctcttgtgaccgaatcaatagcaactgcgacggcaca
tctgtccagacgagagactgttacatgcaagaatgcgacaaacgcttcaagcaggatggc
ggctggagccactggtccccctgggcttcttgctcagtgacatgtggtgagggcatcatc
actcgaatccggttgtgcaactcccctacgcctcagatgggcgggagagactgcgaggga
gacggtcgtcagacagagccatgccagaaggacccgtgcccagtgaatggaggttgggga
ccctggtcaccatgggactcttgctccatcacgtgcggtggaggactgcagcgcagacac
cgtctgtgtaacagccccgctcccaaatacggtggaaaagaatgtatgggtgactccaaa
gcaacccgtttgtgcaacgcccagtcttgtccagttgatggatgcctgtctaacccgtgc
ttcgccggcaccaaatgcaccagcttccccgatggctcctggaagtgcggcgagtgtccg
attggatacactggggatggagtccactgtcaagatatcgacgagtgcaaagaagttcct
gatgcctgttttgtgctgaatggagtccatcagtgtgtgaacacagaaccaggctacaac
tgcctgccctgccctccacgctactctggactgcagcccttcggcaggggaacagagcag
gccattgccaacaaacaggtctgcatacctagaaacccatgcgaggacggcacccatgaa
tgcaataagaatgccaactgcatctacctgggcatcttctctgacatcatgtaccgctgc
gaatgtaaaccaggctacgctgggaatggttacatctgtggaggggactctgaccttgac
ggctggccaaacacagacctccactgtgtggaaaacgccacctaccactgcaagaaggac
aactgtcctgaccttcccaactctggtcaagaagactatgataaagatggaactggagat
gcttgtgataatgatgatgacaatgatgggatccctgatgaaggggacaattgcccgttc
gtcttcaacccaagacagtttgaccatgaccgcgatcaagttggtgacagatgcgataat
tgcccatatgacagtaatccagaacagaccgacaccgacaacaatggcgagggtgatgcg
tgtgccattgacatcgatggtgatggcatcctgaatgagaaggacaactgtccatatgtg
tacaacactgaccagagagacaatgatggagacggagtcggtgaccactgtgacaactgc
ccactggagcacaaccctgaccagatcgactctgactctgacaacattggagacaagtgt
gacaacaaccaggacatcgatgaggatggacatcagaacaaccttgacaactgtccctac
attcccaacgccaaccaggtcgaccacgacaaggacgggaaaggagacgcctgtgatcac
gatgatgataatgatggcgtgcctgatgaaaaagacaactgccgacttgccttcaaccca
gatcaactggattcggacggagacggacgaggcgacatttgcaaggatgactttgatgtc
gacaatgtgccagatattgacgacatctgcccagagaacttcggtatcagtgaaacagac
ttccgtaggttccaaatggttcctctcgatcccaccggaacttcccaaatcgaccccaac
tgggtcgtgcgtcaccagggcaaagaacttctgcagacggtcaactgtgatcctggcatc
gctgttggttatgatgagttcaatgctgtggactttagcggcacgttcttcatcaacaca
gaccgtgacgacgactacgccggctttgtgtttggctaccaatctagctcacgtttctac
gtggtgatgtggaaacagatcacacagacctactggtctcatacacccactaaagcacag
gggtactctggactgtccattaaagtagtgaactcgaccacaggaccaggcgaacacctc
aggaatgctttgtggcacactggagacacggagggacaagtgcgcaccctgtggcatgat
cccaagaacattggctggaaggattacaccgcctacagatggcacctgatccacagacca
aaaaccggacacatcagagtgattatgtatgaaggcaagaaagtcttggctgattcagga
agcatcaatgacaagacatatgcgggaggaagacttggcctatttgtcttctctcaagag
atggtttacttctcagacctcaaatacgaatgccgagatgcatcttaa |