Carassius gibelio (silver crucian carp): 127989236
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Entry
127989236 CDS
T08819
Name
(RefSeq) TNF receptor-associated factor 2 isoform X1
KO
K03173
TNF receptor-associated factor 2 [EC:
2.3.2.27
]
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib04010
MAPK signaling pathway
cgib04137
Mitophagy - animal
cgib04141
Protein processing in endoplasmic reticulum
cgib04210
Apoptosis
cgib04217
Necroptosis
cgib04621
NOD-like receptor signaling pathway
cgib04622
RIG-I-like receptor signaling pathway
cgib04920
Adipocytokine signaling pathway
cgib05132
Salmonella infection
cgib05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
127989236
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
127989236
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
127989236
09143 Cell growth and death
04210 Apoptosis
127989236
04217 Necroptosis
127989236
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
127989236
04622 RIG-I-like receptor signaling pathway
127989236
09152 Endocrine system
04920 Adipocytokine signaling pathway
127989236
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
127989236
09171 Infectious disease: bacterial
05132 Salmonella infection
127989236
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgib03019
]
127989236
04121 Ubiquitin system [BR:
cgib04121
]
127989236
Enzymes [BR:
cgib01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
127989236
Messenger RNA biogenesis [BR:
cgib03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
127989236
Ubiquitin system [BR:
cgib04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
127989236
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
TRAF_BIRC3_bd
zf-TRAF
TRAF2_zf
zf-C3HC4
TRAF3_RING
zf-C3HC4_2
Paramyxo_NS_C
zf-RING_6
zf-C3HC4_4
zf-RING_5
TRAFD1-XIAF1_ZnF
ADIP
Sina_ZnF
Motif
Other DBs
NCBI-GeneID:
127989236
NCBI-ProteinID:
XP_052447374
LinkDB
All DBs
Position
A5:4280535..4307403
Genome browser
AA seq
536 aa
AA seq
DB search
MLLMISTVGPVGKWKAMARPSLPSSLDSTLPGISREVLSVSMEPKYQCQQCKDILRKPFQ
AQCGHRFCVFCFKQLTSSGPIPCEACRAEGIFEETVSVLNIEVAFPDNAARREIDSLPAK
CPNEGCSWSGTLKEYEAQHEGRCDFERIKCEACQALILSSEKDRHNERECEARTLNCKYC
KVTFNFKEIKAHDEICQKFPMQCKDCGKKKIPREKFQEHIKSCAKSKSACQFREIGCRAV
VDNSKQQDHEQTSVMEHMRLLLSVLSSLRLPAGDWQDDSGLGLYRGPEDAPPVGAHAVNH
NAGRGGSPGVQQKVSALENIVCVLNREVERSALTLEALSRQHRLDQEKIENLANKVRQLE
RILTTRDLQLAESEQSLRELQFCTYDGVFIWKIADFSRRRQDAVGGRAPAMFSPAFYSSK
YGYKMCLRLYLNGDGTGRGTHLSLFFVVMRGKYDALLKWPFSQKVTLMLLDQNNREHIID
AFRPDVSSTSFQRPISEMNIASGCPLFCPLSKLAGKSSYLRDDTIFIKAIVDLTGL
NT seq
1611 nt
NT seq
+upstream
nt +downstream
nt
atgttgttgatgatcagcacagtgggccctgttggtaaatggaaggcaatggcacgtcca
tctttaccatcctcattggactccacattacctggaatatctcgagaagtgctgtctgtg
tccatggaaccaaaatatcaatgtcagcagtgcaaagatattcttagaaaacctttccaa
gcacagtgtggacatcgcttctgtgtgttctgtttcaaacaactcaccagctcagggccc
ataccctgcgaagcctgtcgtgctgagggtatatttgaagagaccgtgtcagtgctcaat
attgaagtggcatttcctgataatgccgcacgaagagaaattgatagcttgcctgcaaaa
tgtccaaatgaaggatgtagttggtctggaacactgaaagagtatgaggctcaacatgaa
ggtcgttgtgactttgaacgtataaaatgtgaagcatgtcaagcactcatcttgtcaagt
gagaaagatcgccacaatgagcgggaatgtgaggccagaaccctgaactgcaaatactgc
aaggtcacattcaactttaaagaaattaaggctcatgatgaaatatgtcagaaatttccc
atgcagtgcaaagactgtggtaaaaagaaaatccccagagaaaagtttcaagagcacatc
aagtcttgtgcaaagtctaaatcggcgtgccagttcagagaaattggctgcagggcagtg
gttgacaatagtaagcagcaggatcatgagcagaccagtgtgatggaacacatgcgtctc
ttgctgtctgtgctgtcctctctgcgtctgccggccggagattggcaggacgattctgga
ctaggattgtatcgcggacctgaagacgcacctccagtgggggctcatgctgttaaccat
aatgcaggaagaggaggcagtccgggtgtacagcagaaagtctcagcattggagaacata
gtgtgtgtgttgaacagggaggtggagcgatcggccctcaccctggaggcactatcccgt
caacatcggctagaccaggaaaagatagagaacttggcaaacaaggtgcgacagctggaa
cggattttaaccacgcgagatctacagttggccgaatcagagcagtccttgcgggagctg
cagttttgtacatatgatggagtgttcatttggaaaatagcagacttctctcgtcgcaga
caagatgcagtcgggggccgggcacctgccatgttctcacctgcgttctactccagtaaa
tatgggtataagatgtgtctgagactatacctgaatggtgatggcacaggaaggggcacg
catctttctctattctttgtggtcatgaggggcaaatatgatgcactgctgaagtggccc
tttagccagaaggtgacattgatgttgttggaccagaacaacagagagcacatcattgac
gccttcaggcctgacgtgagctccacatccttccagaggcccatcagtgaaatgaacata
gccagcggttgccctctcttctgccctctctctaagctggcaggcaaaagctcatatctt
cgagatgacaccatatttattaaagccattgtcgacctcactggcttataa
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