Carassius gibelio (silver crucian carp): 128011571
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Entry
128011571 CDS
T08819
Name
(RefSeq) antiviral innate immune response receptor RIG-I-like
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib04622
RIG-I-like receptor signaling pathway
cgib04623
Cytosolic DNA-sensing pathway
cgib05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
128011571
04623 Cytosolic DNA-sensing pathway
128011571
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
128011571
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
cgib04054
]
128011571
Enzymes [BR:
cgib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
128011571
Pattern recognition receptors [BR:
cgib04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
128011571
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIG-I_C
RIG-I_C-RD
CARD_2
ResIII
DEAD
Helicase_C
PhoH
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
128011571
NCBI-ProteinID:
XP_052450085
LinkDB
All DBs
Position
B23:26577953..26591354
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AA seq
931 aa
AA seq
DB search
MYELEKENLRRFSDHITMFLRPSLIKDFMTEYLGKKEAVESILSTETKSVTKAAQMLLDE
ICFLEETGWFQAFLDTLHASDYTGLHHAIKDWSFQELEKLSEHRRLLEKIEASITKHMKP
SEMLVHMSDCLKPRECEEIRAEESQRGRIAASEKLVMSLLRSDKPNWFKLLKIALGNCDL
DEALQLLEKDDEVKAVKVNECDEEPEAMVTTVSFEYREEIEDMLMSSNNTSTSEKPTGFK
GEAERSGERKLREYQKELTAAATQGQNTIICAPTGCGKTIVALAISEYHLKQFPERAKIV
FLATKVDVYEQQYKLFKEHFSSKDPNIRVTGVCGDMEMSVRWLIENHDIVVMTAQILVNA
LQSPELPSLEILSLILFDECHNTTGKHPYNNIMTRYLDTKLSGSTHSLPQIVGLTASVGI
GSFKSRQDAENNILQLCANLDTRVITTVTEHKDELKSYVHTPEKAFFEVKQCSSHPFIGI
IKNIMSNIEQLAQKTYDIESLSNIQNREYGSQKYEQWIVSVQKSCRVLQMKNTDEERRIC
RELYNYTEHLRKYNDALIINEDARTKDALDYLDAFFEQVRNAGYDETERKLTALYDCQRL
QLLHLATEGEQNPKLDELRYILEEEYQNNDQTRTVMFVKTRALADAMKKWIDETDSLKFL
KPGVLIGKGRKSNSGMTLNNKKGILDSFKSSDQSKMLIATSVADEGIDIPQCNLVLMYEY
VGNVVKMVRGRGRAEGSRCFLISSSKECIEKERLNMFKEKIVEEAIEQLQKRPDLSNQVD
KLQRDDKTRRDQISACSEKPKTQGSYELLCSKCKGFACFSDDIRVVQGAHHIVLDRSMFH
RYTTVAHNRPRDFGGFKKKEKMHCAECKHDWGLVTSYSTIQDLPLVKIESFVVRDCLTRR
QQYFRKWRDVTFAIREFDMTEIPPEMCRPRD
NT seq
2796 nt
NT seq
+upstream
nt +downstream
nt
atgtacgagctggaaaaggagaatttgcggcgctttagcgatcacatcaccatgttttta
cgaccgtcactcatcaaggacttcatgacagagtacctggggaaaaaagaggctgtggag
agtattctctctacagagacgaagtctgtgaccaaagctgcccagatgctgctggacgaa
atatgttttttagaggaaactggttggtttcaggcctttctggacactttgcacgcttca
gattacaccggactgcaccatgccattaaagactggagcttccaggagttagagaagctg
agcgaacacaggagactgctcgagaagatcgaagcctcaatcaccaaacacatgaagccc
agtgagatgctcgtgcacatgagcgactgtctgaagcccagagagtgtgaggagatccgg
gctgaggagagtcagcgaggtcgtatagctgccagtgagaagcttgtgatgagtctcctg
cgctcagacaaacccaactggtttaaactgctgaagattgcgctgggaaactgtgactta
gacgaggctctacagctgctggagaaagatgacgaagtaaaggcagtgaaggtcaatgaa
tgtgatgaagaaccggaggccatggttacgaccgtgagtttcgagtacagagaggagatt
gaagacatgctgatgagcagcaacaacacgagcacctcagagaaacccaccgggttcaaa
ggggaagctgagcgatcaggtgaacggaagctgagagaatatcagaaggagctgaccgct
gctgccacccagggccagaacaccatcatctgcgctcccacaggttgtggaaaaactatt
gtggctttggccatcagtgaatatcacctgaaacagtttcctgaaagagcaaagatcgtg
tttttggcaaccaaggtcgatgtctacgaacagcagtacaaacttttcaaggagcacttt
tccagcaaggatccaaacatcagggtgacgggggtgtgcggtgatatggaaatgtctgtg
cgctggctcatagagaatcatgatatcgtggtgatgacggctcagatcctggtgaacgcg
ctgcagagccctgagttgccgtctctggagatcctgtcgctcatcctgttcgacgagtgt
cacaacacgaccggaaaacacccctacaacaacatcatgacccgctacctggacaccaaa
ctctccggcagcacacactcacttccacagattgtgggcctgacagcatcagtcggcatc
ggttcgtttaagagcaggcaggacgcagagaacaacatcttacagctctgtgccaacctg
gacaccagggtcatcaccacagttactgaacacaaagatgagctcaaatcatatgtgcac
acgcctgagaaagcttttttcgaggttaaacagtgctcgagtcaccccttcatcggaata
atcaaaaacataatgagtaacattgagcagctggcgcagaagacctatgacatcgagagc
ctgtcgaacatccagaaccgtgagtacggctcacagaaatatgagcagtggattgtttct
gttcagaagagctgcagagtcttacagatgaagaacacagatgaggagagacgcatctgc
agagaactctacaactacactgaacacctgcggaaatataatgatgctctgatcattaat
gaagatgcgcggactaaagatgcgctggattatctggacgcattctttgagcaggtccgg
aacgccggctacgatgaaaccgagaggaaactcacggcgctctacgactgtcagcggctg
cagttactgcatctggccaccgagggggagcagaaccctaaactagatgagctgaggtac
atcctggaggaggaataccaaaataacgatcaaacgcgcacagttatgtttgttaagaca
cgtgccctcgccgatgcaatgaagaaatggattgatgagactgattccctcaagttcctg
aaacctggtgttctgataggaaaaggcagaaaatccaactcaggaatgactctgaacaat
aagaaagggatcctggactcttttaagagctctgatcagagtaagatgctcatcgccaca
tcagttgctgatgaaggcatcgatatcccacagtgcaacttggttttaatgtatgaatat
gtgggaaacgtggtgaagatggttcgaggtcgtggtcgggcagagggcagccggtgtttc
ctgatctctagtagtaaggagtgcattgaaaaggagagactaaacatgtttaaggagaag
atagtggaggaggccatcgagcagctacagaagcgtccagacctcagtaaccaggtggac
aagctgcagagggacgataaaacccggagagatcaaatcagcgcctgttccgaaaaaccc
aaaactcagggcagctacgagctcctctgcagcaagtgcaaggggtttgcatgctttagc
gacgacatcagagttgtgcagggcgctcatcacatcgttctggatcgatccatgttccac
cgctatacaactgtagcccataacagacccagagacttcggtggcttcaaaaagaaagag
aagatgcactgtgctgagtgcaaacatgactggggcctcgtcacctcttacagcactatc
caggatctgccgctggtgaagatcgagagtttcgtggtgcgggattgtctcacacgcaga
cagcagtacttcagaaagtggcgtgacgtgacgtttgccatccgtgagtttgacatgacg
gagatcccacctgaaatgtgccggccgagagactga
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