Carassius gibelio (silver crucian carp): 128021020
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Entry
128021020 CDS
T08819
Name
(RefSeq) telomerase-binding protein EST1A-like isoform X1
KO
K11124
protein SMG6 [EC:3.1.-.-]
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
128021020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgib03019
]
128021020
03032 DNA replication proteins [BR:
cgib03032
]
128021020
Messenger RNA biogenesis [BR:
cgib03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
128021020
mRNA cycle factors
Common to processing body (P body) and stress granule
128021020
DNA replication proteins [BR:
cgib03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
128021020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
PIN_4
EST1
Motif
Other DBs
NCBI-GeneID:
128021020
NCBI-ProteinID:
XP_052463840
LinkDB
All DBs
Position
A10:7970978..7988900
Genome browser
AA seq
1559 aa
AA seq
DB search
MADELERVRISAAEIRAEASSFTTHSDSVKELREEDKKQLQRDVKCPDLHWYKPDAVNPC
RHKDSAEGASSDPVHLPDDCVFGNDTKMPDCSPSSPGCSRVSTGEFPNDHSQSEVNFNTK
GHVGVVNHQLMDVNSVKSIEGAGLPRSPKQSRKMRKPDREIYQPGGRRSQVHKETRVSKE
LDGDRKRGEEVSVKSAETITKCEKEEKRRNRRGKDGRTKQESRGTVDSPNKNENIVESVT
GKVSSLHLESEESKDGAGKDGTNRRKPSGEGQRSQAGEVTGEDKKMERGNGKSRAGREKG
NNQVFAKKEEGEGVGNGSEADQPEGKKQRSVGGKEASRDQNMNHEKQQGNRSKVQGKLSD
RTDSNRVNSASKRYSQSDIRRPRYRTYSTSSASSGTSMDGLAEAERLRGEGHQLAARTAE
RTTGQKEFIRGSQGRPRRRTARTLSSTDSLEENEVWEREDRRGRVADEAKRTHKGPEGGG
KGQRAPASSGRGGILRVSLDKHLSEEQASRKNPRGRGRGILVLPAHTDLTLTPEPGPQLG
GMRGGMGLSRGRGGRGGGTRRLWDPNNPEKKPALVSSQQSQHASLQQALYLQQGGCGPLH
FLDTDDESTGSPPVRQGEFFQNQQATAMAYYKFQNSDNPYCYPQSTKSPNTPPRYPYPYH
IPYQIPGSNGMYPASVPPFYGPYGQSGPGYPSPVGSGLTPEEAEVQTRGELGKLLRLADS
QELQLSNLLSRERLSQEGLERMAQLRAELLTLYERVILTDIEFSDSQNLDQALWKNVFYQ
VIERFRQLLKDQTSDTAPQIKTMLMTILEEGTAFFDSLLQKLQTVFQFKLEDYMDCMAIR
ARPLRKTVKYALISAQRCMICQGDIARYREQASDSANYGKARSWYLKAQQIAPKNGRPYN
QLALLAVYTKRKLDAVYYYMRSLAASNPILTAKESLMSLFEEAKRKADQIECRRKQEVDG
GTRGPRGHVGGRRGEDGTRVEVWIRPTVHLGTSRPTGSESGKDSEQDGELGALSPSDLNK
RFILSFLHTHGKLFTKVGMESFPAVASRVLQEFRALLQHSPSPLGSTRMLQIITINMFII
HNAQIRAEGQGETRSVLEEQTISLGLAMFGLLVQRCTELLQETPPEPIPAEELGEFEEMD
EEEGMVRVSVFPPDLRELLPSMKVWSDWMLGHPDKWNPPPCSIQGAPDVWQCLANLCNSL
AHVYHGEVLLYKADVDGEGDEELRVLQLEEDKMLSGFVPLLAAPQEACYIDQGTDKAIAA
DCKRVTVLKYFLEALCGQEEPLLAFKGGKYISMATPPTPSVKKENKMQMQEQEDDVIVEE
SSLSASEGEIDGEMEGDGSEDDIRELRARRHALTHKLAQQQKRLDKIQAVLQTGGQLEIE
IRPLYLVPDTNGFIDHLEGLRKLLSCGTYILVVPLIVITELDGLAKGQDSREGISNGAHA
RQVQERARAAVIFLEKAFEARDPCIRALTSRGNTLESIAFRSEDTSGQKGNNDDVILACC
LHYCQDKAKGFMPAERNGSVRLCREVVLLTDDRNLRVKALTRNVPVRDIPAFLIWAQVG
NT seq
4680 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgagctggaaagggtacggatttcagccgcggagatacgagcagaagcgtcg
agtttcacaacacacagcgacagtgtaaaagaattgcgagaggaggataagaagcaactg
cagcgagacgttaaatgtccagacttgcattggtacaaacctgacgctgtcaatccctgc
agacataaagacagcgcagaaggagccagctcagaccctgtgcatctaccggatgattgt
gtttttggtaatgacaccaaaatgcctgactgctcacctagcagtcctggatgctctcgc
gtaagcactggagagtttccaaatgatcacagtcaatctgaagtaaattttaacactaaa
ggacatgtaggtgttgttaaccaccaacttatggatgttaattctgttaaaagcattgaa
ggagctggtttgcccaggtcaccgaagcagtcacgaaagatgcgtaaacctgaccgtgag
atatatcagccaggggggcgaaggtctcaagtacacaaagagaccagggtgagcaaagaa
ttagatggggatcgaaagagaggggaagaagtgagtgtaaaatctgctgaaacaattact
aagtgtgagaaagaggaaaagcgtagaaacaggcgagggaaagatggcaggacaaaacaa
gagtccaggggaactgtagactccccaaacaaaaatgagaatatagtagagagtgtcacc
ggtaaagtcagcagtctccatttagaatctgaggaaagcaaagatggagctgggaaggat
ggtacaaacaggagaaaacctagtggggaagggcaaagaagccaagcaggtgaagtgact
ggagaagacaaaaaaatggagaggggtaatgggaaatctagagcaggaagggaaaaaggt
aacaaccaggtctttgcaaagaaagaggaaggggagggggtaggaaatggctcagaagca
gatcaacctgaaggaaaaaagcagagaagtgttggcggaaaggaggcgagtcgtgaccag
aacatgaaccatgaaaaacaacaagggaacaggtcaaaagtgcaaggaaaactatctgat
agaacggattcaaatcgagtcaactctgcctcgaagcgatactctcagtcagacatccgg
cgtcctcgataccgcacctacagcacgagttcggccagtagcgggaccagtatggacggt
ctggctgaagctgagagactcagaggggagggccatcagctggccgcacgcactgcggag
aggaccactggacagaaggagttcatccgagggagccagggccgcccaaggagacggacg
gcacggacattgtcatccacagattcactggaggaaaatgaggtgtgggagagagaagat
cgaagaggcagggttgctgacgaagccaagagaacccacaaaggtcctgaagggggcgga
aaagggcaaagagcacctgcatctagcggtcgaggaggaattttaagagtttctttggat
aagcatttaagcgaggagcaagcaagtcgaaaaaaccctagaggtcgtgggaggggcatc
ctagtgcttcctgcccacactgatctaactttaacccctgaacctgggcctcagcttgga
ggaatgagaggaggaatgggcctgagccgaggaagagggggccgtggaggagggacaaga
cgcctttgggatccaaataatccggaaaagaaaccagcactggtatcaagccaacaatcc
cagcatgcatctctccagcaggctttgtacttgcagcagggtggatgtgggccgctgcac
tttctggacactgatgacgagagcacaggaagtcctcctgtccgccagggcgagtttttt
caaaaccagcaagccactgccatggcttactacaaattccagaattctgacaatccctac
tgttatccgcaatcaaccaaatccccgaacaccccaccacgctatccttacccatatcac
attccctaccaaattcctggctctaatgggatgtaccctgcctctgtgccaccattttat
ggaccttatgggcaaagtgggccaggttatccctctccagtgggatctggtctcactcca
gaagaggcagaggtgcagacgagaggagagctgggaaagttgctccgtctggctgacagt
caggaactccaactcagtaacctgttgtctcgggaacgactgagccaggagggtttggag
aggatggcccagctcagggctgaactcctgacgttgtacgagcgggtgattttgacagac
atagaattctccgactctcaaaacctggatcaggctctgtggaagaatgtattttaccaa
gtgatcgagaggtttaggcagctgctgaaggaccagacgtcagacacggccccacagatc
aaaaccatgctgatgaccattctagaagaggggacagcattctttgattcgctgctacag
aagttgcagactgtatttcagttcaagctcgaggactatatggactgcatggctatacga
gcaagacccctacgcaagacggtgaagtatgctctgatcagtgcccagcgctgcatgatc
tgtcagggggatatcgcgcgttatcgtgaacaggctagtgactctgctaactacgggaaa
gcacgcagttggtatctaaaagctcagcagattgctccaaaaaacgggcgaccctacaac
cagctggccctactagcagtgtatacaaagcgaaagctggatgctgtatactattacatg
cgtagtctagccgccagtaacccaatcctcacagccaaggagagcctgatgagtctgttc
gaggaagccaagcgcaaggctgaccagattgaatgcagacggaagcaggaagtagatgga
ggaacccgtggtccccgaggtcatgtaggtgggcgtcggggagaggacggcactcgtgtg
gaggtctggatacgtcccaccgtgcatctgggcacttctcgtccgacaggcagtgaatcg
ggcaaagactctgagcaggacggagagctgggagctctgagtcccagtgatctcaacaag
aggtttattttgagtttcctgcatactcatggaaagctcttcactaaagtagggatggag
agttttcctgctgtagcgagtcgagtgttgcaggagtttcgggccctcctccagcacagc
ccctcccctctcggcagcacacgcatgttgcagatcatcactattaacatgttcatcatc
cataacgcacagatcagagctgaagggcagggtgaaactcggtctgtattggaggagcag
accatatctcttggtttagctatgtttggtctccttgtgcaacgttgcactgaactcctt
caagaaacacctcctgagcccatcccagcagaagagctgggggagtttgaagaaatggac
gaggaggaggggatggtgcgggtgtctgtcttccctcctgacctcagagagctgctcccc
agcatgaaggtctggtctgactggatgctcggccacccagacaagtggaaccctcctccc
tgcagtattcagggggctccagacgtgtggcagtgtcttgcaaatctgtgcaactctttg
gcacacgtgtatcatggtgaggttctgttgtataaagctgatgtagatggagaaggagat
gaggaactcagagtcctacagctggaggaagacaaaatgctctctggctttgtcccactg
ctagctgccccacaggaagcctgctatatagaccaaggaacagataaggctatagcagct
gactgtaagagagtgaccgttctgaagtacttcctggaagctctgtgtgggcaggaagag
ccactgctggcttttaaaggaggaaagtatatttccatggcaacacctcctacacccagc
gtaaaaaaagagaacaagatgcaaatgcaagaacaggaggatgatgtcatagtggaggaa
tcgtctctctctgcatcagaaggggagatcgatggagagatggaaggagacggaagtgag
gatgatatcagagagctgagggcacgacgtcacgctctcacacacaagctggcacagcag
cagaaacggctggataagatacaggctgttctgcagacaggtgggcagctggagattgag
atcaggccactctatctggtcccggacacaaacggcttcatagatcatctggagggcctg
agaaagcttctgtcctgtgggacgtacatcctggttgtgcctcttattgtgatcacagag
ttggacggtctggctaaagggcaggacagtcgtgaggggatcagtaatggtgcccatgcc
cgacaggtgcaggaaagagccagagcagcagtcatatttctggaaaaagcatttgaagct
agagatccctgcatcagagcgctcaccagcagaggaaacacactggagtccattgccttc
cgcagtgaggacacgtctggacaaaagggcaacaacgatgatgtcatcctggcctgctgt
ctgcactactgtcaggacaaagccaagggcttcatgcctgctgagagaaatgggtcagtc
aggttgtgcagagaggtggtcttgctcacagatgaccgcaacctgcgagtcaaagctctc
acacgtaatgtgcctgtccgggacatcccagcgttcctgatctgggctcaagtgggctga
DBGET
integrated database retrieval system
