Carassius gibelio (silver crucian carp): 128030998
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Entry
128030998 CDS
T08819
Name
(RefSeq) ATP-dependent RNA helicase A-like isoform X1
KO
K13184
ATP-dependent RNA/DNA helicase DHX9 [EC:
5.6.2.6
5.6.2.4
]
Organism
cgib
Carassius gibelio (silver crucian carp)
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cgib03041
]
128030998
03012 Translation factors [BR:
cgib03012
]
128030998
Enzymes [BR:
cgib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
128030998
5.6.2.6 RNA 3'-5' helicase
128030998
Spliceosome [BR:
cgib03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
128030998
Translation factors [BR:
cgib03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
128030998
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
dsrm
OB_NTP_bind
Helicase_C
DEAD
HA2_N
HA2_C
Dicer_dimer
ResIII
AAA_19
nSTAND3
PhoH
AAA_14
Motif
Other DBs
NCBI-GeneID:
128030998
NCBI-ProteinID:
XP_052475128
LinkDB
All DBs
Position
A2:21708284..21718958
Genome browser
AA seq
1252 aa
AA seq
DB search
MADIKNFLYAWCGKKKLTPSYDIRAAGNKNRQKFVCEVRVESYSYIGMGNSTSKKDAQSN
AARDFVNYLVRMKEVSPGEVPALGVSVPDGGNEEGGGFGNLPSNCPLPPHLAVKKESDGE
PPEGSAPVPGVTGLGYSGFGNTQWERGANIQEYYSKRDEQDAKATLEAEEVDLNAGLHGN
WTLDNAKARLNQFFQKEKNQTDYKYSQVGPDHNRSFIAEMTVFVRQLGRKVTAREHGSTK
KLAAQSSALSIVRQLYHLGVIEAYTGQSKKKEGESVDVYEVNLSDDVQQQIRGIVQELGI
LIPSPPQDPNSPVSLVQGKMAQFEPSQRQSTAGVVPWSPPQVNWNPWTSSNIDEGPLAFC
TPEQISTDLLQELNYQLEQDKNLQTILMERSQLPVKNFKEQIMSTINKNPVVIIRGATGC
GKTTQVPQYILDEFIQAGRASECNIIVTQPRRISAVSVSERVSFERGEEVGKSCGYSVRF
ESVLPRPHASILFCTVGVLLRKLESGIRGISHVIVDEIHERDLNTDFLLVVLRDVVQAYP
DVRIILMSATIDTTMFREYFFNCPIIEVQGRAHPVQVYFLEDCVQMTHFVPPPMDRKKKD
KDEDGGEEDVNCNFICGSEYTAETKRAMSQLNEKETPFELIEALLKYIETLEVPGAVLVF
LPGWNLIYSMQKYLEMNPHFGGPRYRILPLHSQIPREEQRRVFEPTPEGVTKVILSTNIA
ETSITINDVVFVLDSCKQKVKLFTSHNNMTNYATVWASKTNLEQRKGRAGRVRPGFCFHL
CSRARFDKLETHMTPEIFRTPLHEVALSIKLLRLGAIGNFLSKAIEPPPLDAVIEAEHTL
RELDALDCNDELTPLGRILAKLPIEPRLGKMMIIGCIFNVGDALCTISAAACFPEPFINE
GKRLGFVHRNFAGSRFSDHVALLSVFQAWDEVRMGGEDAEIRFCEHKRLNMPTLRMTWEA
KVQLKDILVNVGFPEECLLNQVFNTVGPDNNLDVVISLLTFGSYPNVCYHKEKRKILTTE
GRSALIHKSSVNCPFSSHDMVYPSPFFVFGEKIRTRAISAKGMTLVSPLQLILFGSKKIT
SNGEVVELDDWIKLKIPHDVAGGVAALRALMEALVVEVTKDPEYIRNLDPNNERLLNVIR
LVSRPSSAGINLMASNPRFGDGPRPPKMARSDFGGGGEFRGRGGGGSWSGGGYRGGGGGY
RGSGGYRGGGGGYRGSGGYRGSNGGGGYRGGGGGGYGGRGNRGGWGGNRGGY
NT seq
3759 nt
NT seq
+upstream
nt +downstream
nt
atggcggacattaagaactttttgtatgcttggtgtggaaaaaagaagctaacgccgagc
tatgacatccgagcagctggaaataaaaacagacaaaaattcgtgtgtgaggtgcgtgtt
gaaagttacagttacattggcatgggtaattctaccagcaagaaggatgctcagtccaat
gcagcccgagattttgtgaattatcttgttcggatgaaagaagttagtcctggcgaagtt
cctgctcttggggtcagcgtacctgatggagggaatgaggaaggtggtggatttggaaat
ctcccatccaactgtccactacctccacatctggctgtgaagaaggaatcagatggagaa
cctcctgagggttctgcacctgtccctggagtcacaggtttgggctattctggttttggt
aacacacaatgggagcgaggagccaacatccaggagtattattccaagagagatgaacag
gatgcaaaagcgaccttagaagccgaggaagttgatctaaatgctggcctgcatgggaac
tggactctggacaatgcaaaagctcgtttgaaccagttctttcagaaggagaagaaccaa
accgactacaagtacagccaagtggggcctgaccacaacaggagttttattgctgagatg
acagtctttgtaagacaactgggtaggaaggttactgctcgtgagcatggctctacgaag
aagctggccgcccagtcatccgcgctgtctattgtccgtcagctttaccatttgggggtt
atagaagcctacacaggacagagcaagaagaaagaaggagagagtgtggatgtatatgaa
gtgaatctcagtgatgatgtacagcagcaaatacgcggtattgtgcaggaacttggcatc
ctgatcccttctcctcctcaggaccccaacagtccagtatctctggtgcaagggaagatg
gctcagtttgagccctcacaaaggcagagcacagcaggggtggtgccgtggtctccaccg
caggtcaactggaacccctggaccagctccaacattgacgaaggaccactggcattttgt
accccagaacagatcagcacagacctgctgcaggagctcaactatcagctcgaacaggac
aaaaatctgcagacgattctcatggagcgaagtcagctgccagttaagaatttcaaagag
caaatcatgtccaccattaacaaaaacccagtggtcattattcgtggagccactggctgc
ggaaagaccactcaggttcctcagtacatcttggatgagttcatacaggcaggcagggca
tctgaatgcaatatcattgttacgcagccaagacggatcagtgctgtgtcagtgtctgaa
cgagtatcgttcgagagaggagaggaggtggggaaaagctgtggctacagtgtgcgcttt
gagtctgtcctgcccagacctcatgccagcatcctcttctgcacagtcggggtgttgctg
aggaagctggaatctggtatccgtggaataagtcatgtgattgtggatgaaatccatgag
agggacttaaatactgatttcctgttggtagtgttgagggatgtggtccaggcttaccct
gacgtgcgcatcatcctcatgtctgccaccattgacaccaccatgttcagggaatacttt
tttaactgtcctatcatcgaggtgcaaggacgtgcacatcctgtgcaagtgtattttcta
gaagactgcgttcagatgactcatttcgtaccaccaccaatggaccggaagaaaaaagat
aaagatgaagatggtggagaggaagatgtgaactgtaatttcatctgtggatctgagtat
accgctgaaaccaagcgtgccatgtctcagttgaatgagaaggaaactcctttcgagctc
attgaggctttgctgaagtacattgaaacactggaagtaccaggggccgtgctagtcttc
ctgccaggctggaacctcatctattccatgcagaaatacctggagatgaacccacacttc
ggtggtcctcgctaccgaatcctgccccttcactctcagatccccagggaagaacagaga
cgagtgtttgagccaactcctgagggtgtgactaaggtcattttgtccaccaacatcgct
gaaaccagcatcactatcaacgatgtggtctttgtcctcgactcctgcaagcagaaagtg
aagttgttcacttctcacaacaacatgacaaactatgccacagtgtgggcctccaagacc
aaccttgagcagaggaagggacgagctggcagagtcagacccggcttctgctttcacctg
tgcagcagagctcgttttgacaagctggagacccatatgactcctgaaatcttccgcacg
cccctccatgaagtggccctcagcatcaagctactgagattgggtgccatcggaaatttc
ttgtccaaagccattgagccgcctccattggatgccgttattgaagctgaacatacactg
agagagctggatgctctagactgtaatgatgagctgactccactgggacgtattctggcc
aaactgcctatcgaaccacgtctgggaaagatgatgatcataggatgcatctttaatgtt
ggagatgccttgtgcactatctcagcagcagcctgtttccctgagcccttcatcaacgag
ggcaagcgactcggctttgttcataggaactttgcgggctcccgtttctcagatcatgtt
gccttactctctgtcttccaggcctgggatgaagtccggatgggaggtgaggatgcagag
atccggttttgtgagcacaagaggctgaacatgcccactttgaggatgacttgggaggcc
aaggtccagctgaaagacattcttgtcaatgtcggcttccctgaagagtgcctcctgaat
caggtgtttaacactgtgggaccagacaataacttggatgtggtgatctctctgctgacg
tttggctcttacccaaatgtgtgttaccacaaagagaaaaggaagatcctgaccaccgag
gggcgaagtgctctcattcacaaatcctcagtcaactgtccattcagcagccacgatatg
gtgtatccatctcctttttttgtctttggggaaaagatccgaactcgagccatttctgcc
aaaggaatgactcttgtcagtcctcttcagcttattctgttcggctcgaagaagatcacc
tccaatggggaagttgttgagcttgatgactggatcaaattgaagattccccatgatgta
gccggtggtgtggcggccctgagggcactgatggaagccctggtggtggaggtgaccaaa
gacccagaatacatccgaaatttggatcccaacaatgagcgcttgctgaacgtcattcgg
cttgtgtctagaccctcgtcagcgggcatcaaccttatggcctccaacccacgctttgga
gatggtcctcgtccaccaaagatggcacgtagtgactttggagggggcggagagttcagg
ggtcgtggaggaggtggatcctggtctggtggaggatatagaggcggaggaggtggctac
agagggtctggagggtatcgtggaggcgggggtggatacagggggtccggtggatacaga
ggatctaatggaggtggaggatacaggggaggtggaggaggaggatatggagggagggga
aacagaggtggctggggaggaaacagaggtggttattaa
DBGET
integrated database retrieval system
