Carassius gibelio (silver crucian carp): 128031638
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Entry
128031638 CDS
T08819
Name
(RefSeq) TNF receptor-associated factor 3-like isoform X1
KO
K03174
TNF receptor-associated factor 3
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib04620
Toll-like receptor signaling pathway
cgib04621
NOD-like receptor signaling pathway
cgib04622
RIG-I-like receptor signaling pathway
cgib05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
128031638
04621 NOD-like receptor signaling pathway
128031638
04622 RIG-I-like receptor signaling pathway
128031638
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
128031638
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
zf-TRAF
TRAF3_RING
zf-C3HC4
zf-C3HC4_2
Crescentin
Sina_ZnF
BLOC1_2
zf-RING_UBOX
RING_XB3-XBAT31
zf-TRAF_2
YlbD_coat
FlaC_arch
KIF9
zf_UBZ
MscS_porin
zf-C3HC4_4
Fez1
ATG16
FapA
YmiA-like
Motif
Other DBs
NCBI-GeneID:
128031638
NCBI-ProteinID:
XP_052475899
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All DBs
Position
A17:14174088..14190493
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AA seq
573 aa
AA seq
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MSAGRNVEQQIALQQRPPSLAMPSMAQRPRHDPGFLPIHGGFRDRFVTTPEAKYCCESCR
LVLCNPRQTECGHRFCESCVADLLSKPNPECPADLEPLFEDKIFRDVCCKREIMALKVYC
RSEKNGCKEQMSLQQVMDHLEVCPYFEVPCPLGKCKEKMMRKDMSEHLSRKCKHREITCE
FCNHKMPLTDLQKHKDTVCPAFPVACPNQCSFSSILRSELSIHQHDCPKAQVTCSFIRYG
CSFKGLNQEMREHESSFASEHLRMMVARNTTLEAKVEDVKSELMERYKVLPSLSSRLAEV
EIQNEEMREKIRQLDQKVASVQKLMSTHSEKMLEVEMELRELRPLRAMREEVEALRGSVE
SMRSIVASLDSGRVGSSPGSHTLGSLEQQLSRHDDMMSVHDIRLAEMDLKLQVLETASFN
GVLIWKIRDYKRRKQEAVVSKNLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFF
VVMRGEYDALLPWPFKQKVTLMLMDQGPARKHLGDAFKPDPHSSSFRRPTVEMNIASGCP
LFVAQTVLENGTYIKDDSIFIKVTVDTSDLPDP
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcagggcgtaatgtggaacagcagattgccctgcagcagcgtcctccatctctt
gccatgccctccatggcccagcggcccaggcatgacccaggtttcttgcccatccacggt
ggcttcagggaccgatttgtcacaacgcctgaggccaagtattgctgcgagtcttgcagg
ctagtgctctgtaaccctcgacaaactgagtgtggacatcgcttctgcgagagctgcgtc
gcagacttgctcagtaagcctaacccagaatgtccagctgatttagaaccactctttgaa
gataagatattccgggatgtttgctgcaaaagggaaattatggctctgaaggtctactgc
cgaagtgagaaaaatggatgtaaagaacaaatgagtttacagcaggtcatggaccatttg
gaagtttgtccgtacttcgaggtgccgtgccccttgggaaagtgtaaggagaagatgatg
aggaaagacatgtctgagcacttgagccgcaaatgcaaacacagagagatcacctgtgaa
ttctgcaatcacaagatgcccctcactgacttacagaaacacaaagatacagtgtgtcct
gcatttcctgtagcatgccctaatcagtgctcattttcttccattctaagaagtgagcta
tccattcatcagcatgactgtccaaaggcccaggtgacctgctcctttattcgatatgga
tgctcttttaaggggctgaatcaagagatgagggaacatgagtccagttttgcatccgag
cacctgagaatgatggtggccagaaacaccacactagaggccaaggttgaagatgttaag
agcgagctgatggagcgttataaagttttgcccagcctcagcagtcgtcttgcagaggtt
gagattcagaatgaggagatgagagaaaagattaggcagctggatcagaaggttgccagt
gtgcagaagttgatgagcactcactcagagaaaatgcttgaggttgagatggagctgcgg
gagctgcgtcctctgcgagcgatgagggaggaggtggaggcactgagagggtctgtggag
agcatgcgttcaattgtagcttctcttgattcgggtcgtgttggttccagtcctggttct
cacactctgggctccttagagcagcagctctcacgtcacgatgatatgatgagtgtccat
gacatccgcctggcagagatggacctgaagctgcaggtgttggagacggccagcttcaac
ggtgtgctcatttggaagatccgtgactacaaaagaaggaaacaggaagctgtggtctct
aaaaacctctcgctctacagccagcccttctacacgggctatttcggctacaagatgtgt
gcccgcgtctatctcaatggggacggaatgggtaaaggtacacatctctcgctctttttc
gtggtcatgcgcggagaatatgacgccttgctgccatggcctttcaaacagaaagtaaca
ttaatgttaatggaccaggggccggctcggaaacacttaggtgatgccttcaaaccggac
ccccatagcagtagctttcgccggcccactgttgaaatgaacatagcctcgggttgtcca
ctctttgtggctcagactgtcctggagaatggaacctacatcaaagatgactccatcttc
atcaaggtgactgtagacacctcggacctcccggacccttga
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