Castellaniella ginsengisoli: ABRZ00_02145
Help
Entry
ABRZ00_02145 CDS
T10938
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cgin Castellaniella ginsengisoli
Pathway
cgin03030
DNA replication
cgin03410
Base excision repair
cgin03420
Nucleotide excision repair
cgin03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cgin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ABRZ00_02145 (ligA)
03410 Base excision repair
ABRZ00_02145 (ligA)
03420 Nucleotide excision repair
ABRZ00_02145 (ligA)
03430 Mismatch repair
ABRZ00_02145 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cgin03032
]
ABRZ00_02145 (ligA)
03400 DNA repair and recombination proteins [BR:
cgin03400
]
ABRZ00_02145 (ligA)
Enzymes [BR:
cgin01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ABRZ00_02145 (ligA)
DNA replication proteins [BR:
cgin03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ABRZ00_02145 (ligA)
DNA repair and recombination proteins [BR:
cgin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ABRZ00_02145 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ABRZ00_02145 (ligA)
MMR (mismatch excision repair)
DNA ligase
ABRZ00_02145 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ABRZ00_02145 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
EF-hand_9
Motif
Other DBs
NCBI-ProteinID:
XDJ56007
UniProt:
A0AB39EV48
LinkDB
All DBs
Position
complement(441059..443185)
Genome browser
AA seq
708 aa
AA seq
DB search
MTRRPGAGAAGQDREAADQRRLETLRTEIEAHNRRYYVEDAPSVSDAQYDRLMAELQALE
AAHPEWVTPDSPTQRVGAAPLDHFGSVRHAVRMLSLGNAFEAEDVVAFDDRVAATLMGSG
LLAGAVAPAGPEGVVYVAEYKFDGLAVSLRYEQGRLVQAATRGDGAQGEDITANIRTLRS
VPLRLRGGEAPAVLEVRGEVLMTRADFARLNEAQTARGDKPFVNPRNAAAGSLRQLDPRI
TAARPLRFYAYGWGQIQDAGGTDLRPRETHSGMLDWLAGFGFAVSPDRTLCRGAAELLRF
YEAVGASRANLPYEIDGVVYKVDDLRAQDVLGFVARAPRFAIAHKFPAQEETTRLIGIDV
QVGRTGALTPVARLQPVFVGGVTVTNATLHNEDEIRRKDVRIGDTVVVRRAGDVIPEVVG
PVLALRPADAPVFDLQAVCPVCPVCGSAVERPEGEAITRCTGGLFCPAQRKQMLWHAASR
KALDIDGLGDKLIEQLVDTGKVRTLADLYKLADPSGGGELALSTYPRMGAKSARNLVEAI
NQRRRPPLSRLLYALGIRHVGETTARDVARHFGSIEAIMDAPEESLLQVPDVGPVVAASI
RRFFAEAHNREVIAALRAEGVEPQADAAPAGEKPLAGKTLVLTGTLPTLSRDEATRLILA
AGGKVSGSVSRKTAWVVAGDDAGSKLAKAAELGVAVIDEAGLKTLLGG
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgacgcggcgccccggcgcgggcgccgccgggcaggaccgcgaagccgccgatcagcgc
cgcctggagacgctgcgcaccgagatcgaggcccacaaccgccgctattacgtcgaggat
gcgccgtccgtctcggatgcgcagtacgaccgcctgatggctgaactgcaggccctcgag
gctgcgcacccggagtgggtgactcccgactccccgacgcagcgggtcggtgcggccccg
ctggatcattttggctctgtgcggcatgccgtgcgcatgctgtcgctgggcaatgccttc
gaggccgaagacgtcgtcgccttcgacgaccgcgttgcggccacgctgatgggctccggg
ctgctcgccggcgcggtcgcgccggccgggccggagggcgtggtctatgtcgcggaatac
aagttcgacggcctggccgtgagcctgcgctacgaacagggccgcctcgtccaggcggcg
acccggggcgacggcgcccagggcgaggacatcaccgccaacatccgcaccctgcgttcg
gtgccgctgcgcttgcgcggcggcgaggcgcccgccgtgctggaggtgcgtggcgaggtc
ctgatgacacgggcggatttcgcgcgtctgaacgaggcccagaccgcacggggcgacaag
ccgttcgtcaatccgcgcaatgcggcggccggcagcctgcgccaactggacccgcgcatc
acggcggcccggccgttgcgtttctacgcctacggctggggccagatccaggatgccggc
ggaacggatctgcggccgcgcgagacccattccgggatgctggattggctggccggtttc
ggttttgccgtcagtcccgaccgcacgctgtgccggggggcggcggagctgctgcgcttc
tacgaggccgtgggggcctcccgcgccaacctgccctacgagatcgatggggtggtatac
aaagtggacgacctgcgcgcccaggacgttctcggcttcgttgcccgcgcgccgcgcttc
gccatcgcgcataaatttcccgcccaggaagaaaccacccggctgatcggcatcgacgtg
caggtggggcgcaccggggccctgacgccggtcgccagactgcagccggtcttcgtcggc
ggcgtcaccgtcaccaacgccacgctgcacaacgaggacgagatccggcgcaaagacgtg
cgcatcggcgacaccgtggtggtgcgccgcgcgggcgacgtcatccccgaggtcgtcggg
cccgtgctggcgctgcgtccggccgacgcgccggtcttcgatctgcaggccgtctgtccg
gtgtgcccggtctgcggctcggcggtcgaacggccggaaggcgaggcgatcacgcgctgc
accggcgggctgttctgccccgcgcagcgcaagcagatgctgtggcacgccgccagccgc
aaggcgctggacatcgatggcctgggcgacaagctgattgaacaactggtggataccggc
aaggttcgcacgctggccgatctgtacaagctggcggacccgtccggagggggcgaactg
gcgctgtccacgtatccccgcatgggggcgaaatcggcgcgcaacctggtcgaggcgatc
aaccagcgccgccgcccgcccttgtcgcgcctgctgtacgccctgggcatccgccacgtg
ggcgagaccacggcgcgcgacgtggcgcggcatttcggctccatcgaggcgatcatggat
gccccggaggaatccctgctgcaggtgccggatgtcggcccggtggtggcggcgtctatc
cggcgttttttcgccgaggcgcacaaccgcgaggtcatcgccgcattgcgggccgaaggg
gtcgagccccaggccgacgcggcgccagccggcgaaaagcccttggcgggcaagaccctg
gtgctgacgggtaccctgccgaccctgagccgcgacgaggccacccgcctgatcctggcg
gcgggcggcaaggtgagcggctcggtgtcgcgcaagaccgcctgggtggtggccggcgat
gacgccggcagcaagctcgccaaggccgccgaactgggcgtggccgtgatcgacgaagcc
ggcctgaaaacgctgctcggcggctga
DBGET
integrated database retrieval system
