Cottoperca gobio: 115003467
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Entry
115003467 CDS
T07513
Name
(RefSeq) LOW QUALITY PROTEIN: thrombospondin-1-like
KO
K16857
thrombospondin 1
Organism
cgob
Cottoperca gobio
Pathway
cgob04115
p53 signaling pathway
cgob04145
Phagosome
cgob04148
Efferocytosis
cgob04350
TGF-beta signaling pathway
cgob04510
Focal adhesion
cgob04512
ECM-receptor interaction
cgob04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cgob00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
115003467
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
115003467
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
115003467
04148 Efferocytosis
115003467
09143 Cell growth and death
04115 p53 signaling pathway
115003467
09144 Cellular community - eukaryotes
04510 Focal adhesion
115003467
09142 Cell motility
04820 Cytoskeleton in muscle cells
115003467
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cgob04131
]
115003467
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cgob00536
]
115003467
Membrane trafficking [BR:
cgob04131
]
Endocytosis
Phagocytosis
Opsonins
115003467
Glycosaminoglycan binding proteins [BR:
cgob00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
115003467
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
EGF_3
TSP1_CFP_C
Laminin_G_3
cEGF
TSP1_ADAMTS
EGF
TSP1_CCN
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
115003467
NCBI-ProteinID:
XP_029281118
Ensembl:
ENSCGOG00000017162
UniProt:
A0A6J2P5G0
LinkDB
All DBs
Position
24:4544634..4556259
Genome browser
AA seq
1110 aa
AA seq
DB search
MKLTGIFLLLMCWTCESARVAESRDDNSVYDLFELVKVPKKNHGVTLVKGDDPYSPAYKI
LNPDLIPPVPESAFRDLIDSIHAERGFLLLLNFKQFKRSRGSLLTVEKTDGSGPVFEIVS
NGKANTLDIVFSTENKQQVVSIEDVNLATGQWKNITLFVQEDRAQLYAGCEDVNTAELDA
PIQSILTLETPASSQLRIGKGAVKDRFTGVLQNVRFVFGASLEAILRNKGCQSSITTDSM
ILENLNGSSAIRTEYTGHKTKDLQMVCGFSCEDLISMFKELKGLGVVVKELSNELRQLTD
ENKLIKNRIGIHSGVCIHNGIVHKNRDEWTVDDCTECTCQNSATVCRKISCPLISCANAT
VSDGECCPRCGTLSDYAEDGWSLWSEWTHCSVSCGRGIQQRGRSCDRINNNCEGTSVQTR
DCYLQECDKRFKQDGNWSHWSPWSSCSVTCGAGVITRIRLCNSPTPQLGGKNCEGEGRQT
EACQKSPCPSXVSNPCFAGAKCTSLPDGSWKCGKCPAGYTGNGIKCKDIDECKEVPDTCF
EFNGVHRCENTDPGYNCLPCPPRYSGPQPFGKGVEQAAAKKQVCTPRNPCLDGSHDCNKN
ARCNYLGHFADPMYRCECKPGYAGNGHICGEDTDLDGWPNADLVCVENATYHCKKDNCPN
LPNSGQEDYDKDGVGDACDNDDDNDGIPDDRDNCPFVYNPRQYDYDRDDVGDRCDNCPYN
SNPDQTDTDNNGEGDACAVDIDGDGILNEKDNCPHVYNVDQRDTDLDGVGDMCDNCPLEH
NPDQVDSDDDRVGDKCDSNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHDDDN
DGIPDDKDNCRLAFNPDQLDSDGDGRGDACKDDFDQDNVPDIYDVCPENFDISETDFRQF
QMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGYHEFNSVDFSGTFFINTERDD
DYAGFVFGYQSSSRFYVVMWKQITQTYWSNKPTKAQGYSGLSIKVVNSTTGPGEHLRNAL
WHTGNTPGQVRTLWHDPKNVGWKDFTAYRWHLIHRPRTGLIRVVMYEGKKIMADTGSIYD
KTYAGGRLGLFVFSQEMVYFSDLKYECRDV
NT seq
3333 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgacagggatatttttgctattgatgtgttggacctgcgagagtgcgcgagtc
gcagagagtcgagacgacaatagcgtgtatgacttgtttgagctcgtcaaagtcccaaag
aagaaccacggggtcaccctggtgaaaggagacgacccgtacagccccgcctacaagatc
ctcaacccggacctgatccccccggtccccgagagcgcctttagggacctcatcgattcc
atccacgccgagaggggattcctcctcctgctcaacttcaagcagttcaaacgcagcagg
ggaagcctcctgaccgtggagaagacagatggctccggacccgtgtttgagatcgtctcc
aacggcaaggcgaacaccttggacatagttttctccaccgagaacaagcagcaggtggtt
tccattgaagatgtgaatctggctacgggccagtggaagaatatcacgctgttcgtgcag
gaggaccgggcgcagctgtacgcgggatgcgaggatgtgaacacagcagagctggatgcg
cccatccagagcatcctgacgctggagacgccggccagctcgcagctcaggattggcaag
ggagccgtgaaggacaggttcacgggtgtcctacaaaacgtgcggtttgtgtttggagca
tcactggaagccatccttcgcaacaaaggatgccaaagctccataacgactgactccatg
atcctggagaacctcaatggctcttcggccatcagaacagagtacactggacacaagact
aaagacctgcagatggtctgtggcttctcctgcgaggacctgatcagcatgtttaaggag
ctgaagggccttggtgtggtggtgaaggagctgtccaatgaactccgccagctgacggat
gagaacaaactgattaagaaccgcattggcattcacagtggcgtctgcatccacaacggc
attgtgcacaagaacagagacgagtggaccgtcgatgactgcacagagtgcacttgtcag
aactctgctactgtgtgccgcaagatctcctgccccctgatctcctgtgctaatgctact
gtttctgatggagagtgctgcccacgctgtggaacactgagcgactatgcagaagacggc
tggtcgctgtggtctgaatggacccattgttctgtgtcatgtgggcggggcatacagcag
cgtgggcgctcttgcgaccgtatcaataacaactgcgagggcacctctgtgcagacccgc
gactgctacctccaggagtgtgacaagcgatttaagcaggacggcaactggagccattgg
tcaccctggtcatcctgctccgtcacttgtggtgctggtgtcataacccgtatccgtctt
tgcaactcccccacccctcagcttggaggaaagaactgcgagggagaaggccgacaaacc
gaggcgtgtcagaaatctccatgccccagtnaagtgtctaacccttgctttgctggagcc
aagtgcaccagtttacctgatggttcctggaagtgtggaaagtgcccagctggctacacc
ggcaatggcatcaagtgcaaagatattgatgagtgcaaggaggtcccagatacttgcttt
gagtttaatggtgtgcaccgctgtgagaacacagatcctggctacaactgtctgccctgt
cctcctcgctactcaggaccccaaccgtttggcaagggtgtggagcaggctgctgctaag
aaacaggtgtgcacgccccgtaatccctgcctcgatggaagccatgactgcaacaaaaac
gcccgttgtaactaccttggacactttgccgatcccatgtaccgctgtgagtgcaaaccc
ggctatgctggcaacggccatatctgtggagaggacacagatctggatggctggcccaat
gctgacttggtttgtgtggagaacgccacctaccactgcaaaaaggacaactgtccgaac
ctccccaactctggacaggaagattacgataaggacggcgttggagatgcttgcgacaat
gatgatgacaatgatggcattcctgacgatagagataactgtccattcgtgtacaacccc
aggcagtatgactatgaccgcgatgatgtgggtgaccgctgtgacaactgcccctacaat
agtaacccagaccaaacagacacagacaacaacggagagggagacgcctgcgctgtggac
attgatggagatgggatattgaatgagaaggacaactgtccccatgtgtacaatgtcgac
cagagagacacagatctggacggagtgggagacatgtgcgataactgccctctggaacat
aatccagatcaggtggattcagatgatgaccgggtgggagacaagtgtgacagcaaccag
gacattgatgaggacggacaccagaacaacctggacaactgtccatacatccctaacgcc
aaccaggctgaccatgacaaggatggcaagggagacgcctgtgaccatgatgacgacaac
gacggcatccctgatgacaaggacaactgcagactggccttcaaccctgaccaactggat
tctgacggtgatggccgtggagatgcttgcaaagatgactttgaccaagacaacgtacct
gacatctatgatgtatgcccagagaactttgacattagtgagacggacttccgccagttc
cagatggttcctcttgaccccaaaggcacctcgcagattgatcctaactgggttgtccgc
catcagggcaaagaactggttcaaactgtcaactgcgaccctggcattgctgttggttac
cacgagttcaattcagtggacttcagtggaactttcttcatcaacacagagagggatgat
gattacgccggctttgtgtttggctatcagtccagttccaggttctatgtggtcatgtgg
aagcagattacgcagacgtactggtcgaataaacccaccaaggcccagggctactctggc
ctgtccatcaaagtggttaactccaccactggcccaggagagcatctgaggaatgccctc
tggcacacaggaaataccccaggacaggtccgcactctctggcatgaccctaagaacgtt
ggatggaaagacttcactgcctacagatggcatctgatccacagaccaagaacaggactt
attagagttgtgatgtacgagggcaagaagatcatggcagatactggtagcatctacgac
aagacatatgctggtggcaggcttggtctttttgtcttctcacaagagatggtatacttc
tcagacctcaagtatgaatgcagagatgtctaa
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