Cottoperca gobio: 115025041
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Entry
115025041 CDS
T07513
Symbol
brca1
Name
(RefSeq) LOW QUALITY PROTEIN: breast cancer type 1 susceptibility protein
KO
K10605
breast cancer type 1 susceptibility protein [EC:
2.3.2.27
]
Organism
cgob
Cottoperca gobio
Pathway
cgob03440
Homologous recombination
cgob03460
Fanconi anemia pathway
cgob04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
cgob00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
115025041 (brca1)
09124 Replication and repair
03440 Homologous recombination
115025041 (brca1)
03460 Fanconi anemia pathway
115025041 (brca1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cgob01009
]
115025041 (brca1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cgob04121
]
115025041 (brca1)
03036 Chromosome and associated proteins [BR:
cgob03036
]
115025041 (brca1)
03400 DNA repair and recombination proteins [BR:
cgob03400
]
115025041 (brca1)
Enzymes [BR:
cgob01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
115025041 (brca1)
Protein phosphatases and associated proteins [BR:
cgob01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
115025041 (brca1)
Ubiquitin system [BR:
cgob04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
115025041 (brca1)
Multi subunit type E3
BRCC complex
115025041 (brca1)
Chromosome and associated proteins [BR:
cgob03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
115025041 (brca1)
DNA repair and recombination proteins [BR:
cgob03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
115025041 (brca1)
BRCA1-A complex
115025041 (brca1)
BRCA1-B complex
115025041 (brca1)
BRCA1-C complex
115025041 (brca1)
BRCA complex
115025041 (brca1)
FA (Fanconi anemia) pathway
Downstream FA components
115025041 (brca1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
BRCT_2
zf-C3HC4
zf-C3HC4_2
RTT107_BRCT_5
zf-C3HC4_4
zf-RING_2
zf-C3HC4_3
zf-RING_UBOX
RING_XB3-XBAT31
zf-Nse
zf-RING_5
YicC-like_C
zf-MIZ
zf-ANAPC11
zf-RING_4
zf-RING_6
zf-RING_10
PTCB-BRCT
TRAF3_RING
zf-rbx1
zf-PARP
Sina_RING
Motif
Other DBs
NCBI-GeneID:
115025041
NCBI-ProteinID:
XP_029312884
UniProt:
A0A6J2RSE4
LinkDB
All DBs
Position
19:complement(12848353..12867772)
Genome browser
AA seq
1413 aa
AA seq
DB search
MESPMATEVKRGISVLWATLQCPICLDLMTAPVSTKCDHQFCKFCMMKLLDNTKQNRANC
PVCKTKITKRSLQESPGFQKLVSGLQDMIQAYEHDTGTNYFTGMSQLKGQLGVTDSEATK
HCHDMSFGDAPDNEENVDNDDISRSHSSTIAAQNGFARLMGLEDTSPLTTENEGLDSGLG
EAPLMSDKKIHSPTDNLESVETEMSEIVEKATSSLKTRGKIRFPSLIPDETEHQPLRKSS
RKKQTKDLDPDKIFEERKKKSLEKVAEWLMKVPTEGSLELEKPNEDTDDSDSCSSSSTID
VKQHNSVVNPTRQDRAKALEEQVFGAVYKRGRRGNGTRSLPLNVFVEPPTTEETQMVPNI
RKSKTMTPSDFKKTSSGDEHESDIEGKQQRTEVVNDTSSDIFKEAEKMEVVVEKDTDNYG
EELNNFQEIDQNDGKDEVPCPASDIGQQQPDIKSKKRTCNTLQQVDSDLQEQAKATSESS
AQKKTDKRKGKNVRSEKGKPARVPKPLVLVGVQNGESSPKTRPRSEEVQVHIENYPSSED
QEVPVTRSTRRSRRLQLFTEEVQEGHKKANLKANVAEKHSNVAKQSEEAKDGALDNTASP
KNGSMTQVAEKNGCIYDQDLGGIENTHCRETTSYLRPTEDDEESIAEVPNTETLSEAGAA
YITVVPSSTSPAEAPLVHPTLESHDPTNHLPNNSQLETFAENEEDKNDSELDTEQLLRSF
KATKRKSFNLGGPSVKRIRGLDQEDTQVAEAEENQRLSSGVESAKNEIYTKVSDITNQEA
LRDKENSSCSDFISPSISPARARKPVVEKLDQVVVEASIPDSSYSGQDSAGGNSVSRNNV
NSSLTPNKVSKREIESPHLSDSGLHFTAAEHDEPNEPSKYSPMRDSISLRNSAESGTHLV
NAAEHFLNTEYSLTPDGLGGIPVVLNVHEANSRGSGELSTHSSFQSMPRKRTRVQRLEPS
SESDCNEERLPTLTEIFGTSAPPSAVTKDQGDSGEDRREGGTADGAQQMSRTPACPSPDS
VNSSQASVDLFGTPDECDVPVNGVSASSQFDSSQFSSEVLVTQQKIDMQKELVRLEKLMA
LVTEVLQEKEDSPVKEVPSKANQSSNTTGPDAHRPLPCEQSTGQGSHREAAPEGDPSTRA
SGGKGVTQPSVSETATSAPHTQGRAVKATGSSKIPSSAAKTSESNGSAPDGQEDKENSTP
PRDRSTAKMVLVLSGLAPDEQITVKKFAKRVGARVVSQVTPEVSHIIMHTDEQLVCERTL
KYFLGIASRKWVVSFQWISECFKQKKLLDESVFEVRGDVVNGPIHQGPMRARTTEDNNLL
MKGFKICFQGPFTDMTTDEMEWMVELCGAAVVKDPLLDSKQKFHQLVIVQPASESSSSST
YSSLSRQATVVTRGWLLDTVATYTLQNYNKYTT
NT seq
4242 nt
NT seq
+upstream
nt +downstream
nt
atggaatccccaatggccactgaggtaaaaagggggatttcagtcctttgggcgactctg
cagtgtcccatatgcctggatttaatgactgcacctgtgtctactaagtgtgaccatcag
ttttgcaaattttgtatgatgaaacttttggacaacaccaaacaaaacagggctaactgt
ccagtgtgtaaaaccaagataaccaaaaggagtttgcaggagagccctggctttcagaaa
cttgtatcaggattgcaggacatgattcaggcatatgaacatgacactggcaccaactac
ttcactggaatgtcccagctaaaaggtcaattgggagtcacagattctgaagctactaaa
cattgtcatgatatgtcatttggagatgcacctgacaatgaggaaaatgtcgacaatgat
gatatttcaaggtctcactcttcaactatagcagcccagaatggatttgcaagactgatg
ggacttgaagacacaagtcctttaacaacagaaaatgaaggcctggacagtggccttggg
gaggccccactaatgtctgacaagaaaatacacagccctacagataatttggaatcagtc
gaaacagaaatgtcagaaattgtggagaaggcaacatcatcactcaaaactagaggcaaa
ataagatttccatcattaattcctgacgagacggaacaccaacctttaagaaagtcctca
aggaagaagcagacaaaggatttggatcctgacaagatttttgaggagagaaagaagaaa
agtctagagaaagtcgccgagtggctcatgaaagttccaactgaaggaagtctcgagtta
gagaaacccaacgaagacaccgatgactctgacagctgttcttcctcttcaacaatagat
gtaaagcaacataacagtgttgtgaatcctacgagacaggatcgcgctaaagccctggag
gagcaggtgtttggtgccgtgtacaaacgagggagaagaggaaacgggaccaggtctctt
ccacttaatgtttttgtagaaccaccaactactgaagaaacacaaatggtcccaaatatt
aggaagagtaaaactatgactccttctgatttcaagaaaacaagctctggagatgaacat
gaaagcgatatagagggaaagcaacaaaggacagaagtagtaaatgacaccagcagtgac
atttttaaagaagcagaaaagatggaagtcgtggttgaaaaagatacagacaactatggg
gaagagttgaataactttcaagaaattgaccaaaacgatggcaaagatgaggttccctgt
cctgcatctgacattggacaacagcaaccagacataaagtcaaagaaaagaacgtgcaac
actctgcagcaggtcgacagtgatttgcaagagcaagctaaggcaacgtcagaaagtagt
gcgcaaaagaaaaccgacaagaggaaaggaaaaaacgtgaggtcagaaaaaggcaagccg
gctagagtgccgaaaccacttgttctggttggagttcaaaatggagaaagcagtcctaag
actagaccaaggtcagaagaagttcaagttcatattgagaattacccgagcagcgaggac
caggaagtccctgtcacgaggagcactaggagaagcagaagacttcaactcttcactgag
gaagtccaggaaggtcacaagaaagcaaacttgaaagccaatgtagctgaaaaacacagc
aatgtcgcaaagcaatctgaggaagctaaagatggagcgttggataacacggcatcccct
aagaatggaagcatgacgcaggtggctgaaaaaaacgggtgtatttatgatcaagattta
ggaggaatagaaaacacgcactgtcgagagacaacatcttatttgagaccaacagaagat
gacgaagagtccattgctgaagtgccaaatactgaaacgttgtctgaagctggtgctgca
tatatcactgtggtcccaagctctacgagtccagctgaagcgcctttggtacatccaaca
cttgaaagtcacgatccaacaaatcatctcccaaacaatagtcagttggaaaccttcgca
gaaaacgaggaggataagaatgacagtgaactggacacagagcaactgctcaggagcttc
aaagccactaaaaggaaatctttcaatcttggcggcccgagtgtgaaaaggatccgtggt
ttagaccaagaagacacgcaggttgccgaagcagaggaaaaccagcgtcttagttctggt
gttgaatctgcaaaaaatgagatttacacaaaggtatctgatataaccaaccaagaggcg
ttaagagataaggaaaactcatcttgcagtgatttcatatccccttccatctcacccgca
cgggcaagaaaaccagtcgttgagaaactagatcaagtggtggtagaagcctcgatccct
gatagcagttattcgggtcaggacagcgctggtggtaactctgtctccaggaataatgtc
aacagctccctcactcctaataaagtgtcaaaacgggaaatagaaagtcctcatctttcc
gattctgggctccacttcacagccgctgaacacgatgagccgaatgaaccctcaaagtat
tctccgatgagagacagcatttcgctgcgcaattcagctgagagtggaacacatttggtc
aacgccgctgaacatttcttaaacacggagtactctctaactcccgatggccttggtgga
ataccagttgtgctaaatgtccacgaagcaaacagccgtggtagcggagagctgagcacc
cattcctctttccagagcatgcccaggaagaggacaagggtccagaggctcgagccgtcc
tccgagtcagactgcaacgaagagaggttaccaactttgacagaaatcttcggaacatca
gctcctccctctgctgtgacgaaggatcagggagactccggtgaagatagacgtgaaggt
ggtacagctgatggagcacaacagatgagccgtacacctgcgtgccccagccctgactct
gttaattccagccaagcatctgtggacttgtttggcacgccagatgaatgtgatgtccca
gtaaatggtgtcagcgcttcctcacaatttgactcatcacaattttcaagcgaagtcctt
gttacacagcaaaagatagacatgcagaaggagctggtaaggttggagaagttgatggct
ctggtgacggaggtgcttcaggagaaagaggacagtcccgtgaaagaagtcccctcaaaa
gcaaatcagagcagcaacactacaggcccagatgctcacagacccctcccatgtgagcag
agcacaggtcaaggttcacaccgggaagctgctccagaaggagatcccagcacaagagca
tctggtggcaaaggagtcacccagcccagtgtgtcagagacggcaacgagcgctccgcac
acacagggccgagctgtaaaagccaccggatcctccaaaattcctagttcggcagccaaa
acatcagagagcaacggttcagcaccagatgggcaagaagacaaagaaaatagcactcct
ccgagagaccggagtacagctaagatggtgctggtgttgtctggattggcccccgatgaa
cagataacggtgaaaaagtttgccaagcgagtcggtgcccgcgtggtgtctcaggtaacc
ccggaggtgtcccatatcataatgcacacagatgaacaactggtatgtgagcgcacactg
aagtacttccttggcatcgcaagcaggaagtgggtggtgagcttccagtggatttcagag
tgcttcaaacaaaagaaactcttagatgagagtgtgtttgaagtgagaggtgacgtggtg
aatggacccatccatcagggccccatgagagctcgtaccactgaagacaataatttgctc
atgaagggcttcaagatctgcttccaaggaccttttacagacatgactacagatgaaatg
gagtggatggtggagctctgtggagcagctgtggtcaaagatccgcttctcgacagtaaa
cagaagttccatcagctggtcattgtacagccggcatcagagtcgtcgtcgtcgtcaaca
tacagcagtctctctagacaagcgacagtcgtcacacgtggttggctgttggataccgtg
gcaacctacaccctccaaaactacaacaagtacacaacatga
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integrated database retrieval system
