Cottoperca gobio: 115027426
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Entry
115027426 CDS
T07513
Symbol
thbs1
Name
(RefSeq) LOW QUALITY PROTEIN: thrombospondin-1
KO
K16857
thrombospondin 1
Organism
cgob
Cottoperca gobio
Pathway
cgob04115
p53 signaling pathway
cgob04145
Phagosome
cgob04148
Efferocytosis
cgob04350
TGF-beta signaling pathway
cgob04510
Focal adhesion
cgob04512
ECM-receptor interaction
cgob04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cgob00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
115027426 (thbs1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
115027426 (thbs1)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
115027426 (thbs1)
04148 Efferocytosis
115027426 (thbs1)
09143 Cell growth and death
04115 p53 signaling pathway
115027426 (thbs1)
09144 Cellular community - eukaryotes
04510 Focal adhesion
115027426 (thbs1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
115027426 (thbs1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cgob04131
]
115027426 (thbs1)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cgob00536
]
115027426 (thbs1)
Membrane trafficking [BR:
cgob04131
]
Endocytosis
Phagocytosis
Opsonins
115027426 (thbs1)
Glycosaminoglycan binding proteins [BR:
cgob00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
115027426 (thbs1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
TSP1_ADAMTS
EGF_3
TSP1_CFP_C
cEGF
EGF
TSP1_CCN
Motif
Other DBs
NCBI-GeneID:
115027426
NCBI-ProteinID:
XP_029316624
Ensembl:
ENSCGOG00000018279
UniProt:
A0A6J2S3Q7
LinkDB
All DBs
Position
22:complement(11987490..11996461)
Genome browser
AA seq
1170 aa
AA seq
DB search
MMLCGIFLLLMLWSCEGARLAESRDDNSVYDLFDLARVNKRHHGVSLVKGADPYSPAYKV
LNADLIPPVPDSSLRDLLDSIQSERGFLLLVNLKQFKKTRGSLLTIEKNDGSGPVFEIIS
NGKANTLDVVYSTITQQQVVSIEDADLATGNWKNITLFVQDDRVQLFVGCEEINVSEMDL
PISKVLSQEVADIATLRIGKGAVRDRFMGVLQNVRFVFGTTLDAILRNKGCQSGATLTDV
MTLENPVNGSSPAIRTHYNGHKAKEMQSVCGFSCDDIAGIFKELKGLGVVVKQLSNELRK
VSEESTLLKNQMNIHSGICIHNGIVHKDKDEWTVDGCTECTCQNSATVCRKISCPLIPCA
NATVPEGECCPRCERPIGEDGWSPWSDWTHCSVTCGRGIQQRGRSCDRINSNCEGTSVQT
RDCYPQECDKRFKQDGGWSHWSPWSSCSVTCGEGVITRIRLCNSPTPQMGGRDCQGDGRQ
TEICQKSHCPIDGGWGPWSIWETCSVTCDGGVQTRKRLCSDPIPKYGGKDCVGDAAGSQL
CNKKDCPVDGCLSNPCFPGAKCTSSPDGSFRCGKCPLGYTGNGIACKDIDECKEVSDACH
TLNGVHRCENSEPGYNCLPCPARFSGPQPFGRGVEQATAKKQVCKPRNPCQDGSHDCHKN
ANCIYLGVFSESMFRCECKPGYAGNGRICGEDTDLDGWPNTNLRCVENATYHCKKDNCPS
LPNSGQEDHDKDGLGDECDHDDDNDGIPDDRDNCPKLYNPAQYDADRDDIGDRCDNCVFE
ANTDQTDTDNNGEGDACAVDIDGDGILNENDNCPYVYNVDQRDTDGDRVGDHCDNCPLEH
NPDQFDSDSDRVGDKCDNNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHDDDN
DGIPDDKDNCRLAFNPDQLDSDGDGRGDICKDDFDQDNVLDIYDVCPENFAISETDFRRF
QMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGFDEFSAVDFSGTFFINTDRDD
DYAGFVFGYQSSSRFYTVMWKQITQTYWSHTPTRAQGYSGLSIKVVNSTTGPGEHLRNAL
WHTGDTAGQVRTLWHDPKNIGWKDFTAYRWHLTHRPKTGLMRVVMYEGKRIMADSGNIYD
KTYAGGRLGLYVFSQEMVYFSDLKYECRDT
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
atgatgctgtgtggcatctttttgctgttgatgctttggagctgtgaaggcgcgagattg
gcagagagtcgggatgataacagtgtgtatgacctatttgatctggcccgggtcaacaaa
agacaccacggagtgagtttggtcaaaggtgcagatccctacagccctgcatacaaggtt
ctcaacgcagacctgatccccccagtccccgacagctccctcagggacctccttgactcc
atccagtctgagagaggcttcctcctcctggtaaacctgaagcagttcaagaaaaccagg
ggcagccttttgaccatcgagaagaatgatggatccggacccgtttttgagatcatctcc
aacgggaaggcgaacactctggatgtggtgtactccaccatcacccagcagcaggtcgtg
tcgatcgaggatgcggatttggccactggaaactggaagaacatcaccctgtttgttcag
gatgaccgggttcagctttttgtcggctgtgaggagatcaatgtatcagagatggatctg
ccaatctccaaagtgctgtcccaggaggtggcagacattgccacactcaggattggaaaa
ggagctgtgagggacagattcatgggagtgcttcaaaatgtgcgctttgtctttggaacc
actcttgatgccatactgagaaataagggatgccagagtggagctaccttaactgatgtc
atgaccttggaaaacccagtcaatggctccagccctgccattaggactcattacaacggg
cacaaagccaaagaaatgcagtctgtctgcggcttctcttgtgacgacatcgccggcatt
tttaaggagctcaagggactcggtgtggtcgttaaacagctgtcaaatgagctccgcaaa
gtgtctgaggaaagcacactgctgaaaaatcaaatgaacatccacagtggcatatgcatc
cacaacggcattgtgcacaaggacaaagatgaatggaccgtggatggctgcaccgagtgc
acctgccagaactctgctactgtgtgtcgcaaaatctcctgccctctgatcccatgtgct
aacgccaccgtgcctgaaggagagtgctgcccgcgctgtgaaagaccgatcggagaggat
ggttggtccccctggtctgactggacccattgttcagtgacttgtggtcggggcatccag
cagcgtggacgctcctgtgatcgcattaacagcaactgtgagggcacatctgtccagacc
cgtgactgctacccgcaggaatgtgacaaacgcttcaaacaggatggtggttggagccac
tggtctccctggtcttcgtgctctgtgacctgcggggagggggtcatcacccggatacgc
ctctgcaactcccccacaccccagatgggtggcagggactgccagggagatggacgtcaa
accgaaatctgccaaaagtcacactgtcctatcgatggaggttggggaccttggtcaatt
tgggaaacctgcagtgttacctgtgacggaggagtccagacccgcaaacgtctctgctct
gaccccatccctaaatatggaggaaaggactgtgttggtgatgctgctggatctcaactg
tgcaacaaaaaggactgccctgttgatggttgtctctccaacccgtgcttccctggggca
aagtgcaccagctcccccgatggttctttcaggtgcggcaagtgtccacttggatacact
gggaacggcatcgcctgcaaagacattgatgagtgtaaagaggtctctgacgcttgccac
acacttaacggagtccatcgctgtgaaaactctgagcctggttacaactgtctgccctgc
cctgcacgtttctccggtcctcagccctttggaagaggagtggaacaggcaactgctaaa
aaacaggtttgcaaaccccgcaacccttgccaagatggtagccatgactgccataaaaat
gcaaactgcatttacttgggcgtcttctcagagtccatgttccgctgcgagtgcaagcca
gggtatgctggaaatggtcgtatttgcggagaggacactgacctggatggatggcctaat
actaacctgcgttgtgtggagaacgccacctaccactgcaagaaggataactgccccagc
cttcccaactctggccaggaagatcatgacaaagatggcctgggtgatgaatgtgaccat
gatgatgacaatgatgggatccccgatgatagggacaactgcccaaaactgtacaaccct
gcccagtatgatgcagacagagatgacattggcgaccgctgtgacaactgtgtgttcgag
gctaacactgaccaaactgacactgacaacaatggagagggtgatgcctgtgctgttgat
attgatggcgatggcattctgaatgaaaatgacaattgcccatatgtttacaacgtggac
cagagagataccgacggggacagggtgggagaccattgtgacaactgccctctggagcac
aaccctgatcagttcgactctgactcagatcgcgtaggagacaagtgcgacaacaaccag
gacattgacgaagacggtcaccagaacaacttggacaactgcccatacatacccaatgcc
aaccaggcagaccacgacaaggatggcaagggtgatgcctgtgatcatgacgatgacaac
gacggcattcctgatgacaaagacaactgtaggctggcatttaaccccgatcagctggac
tctgatggtgatggtcgtggtgatatatgcaaagatgattttgaccaagacaatgttctg
gacatctatgacgtgtgcccggagaactttgccattagtgaaacagacttccgcagattc
caaatggttcctctggaccccaagggcacctcccaaattgaccccaactgggtggtccgg
catcagggcaaggagttggtgcagactgtcaactgcgaccctggcattgctgttggtttt
gatgagttcagcgcagtggatttcagtggaacgttcttcatcaacacggacagagatgat
gactacgctgggttcgtgtttggctaccagtccagctcacgcttttacacggtgatgtgg
aaacagatcacacagacctactggtcccacacgcccacaagagctcaaggctactctggc
ctgtcaatcaaagtggtcaactccaccaccgggcctggtgagcatctgaggaacgccctg
tggcacaccggagacacagcaggacaggtgcgcactctgtggcacgaccccaagaacatt
ggctggaaggacttcaccgcctacagatggcatctgacccacagacccaagactggactt
atgagagtggtcatgtatgaaggaaagagaatcatggctgattctggaaacatctacgac
aagacatatgctggagggcgactaggcttgtacgtcttctctcaggagatggtttacttc
tcagatctcaaatatgaatgcagagatacataa
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