Corynebacterium gottingense: CGOTT_05035
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Entry
CGOTT_05035 CDS
T09376
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cgoi
Corynebacterium gottingense
Pathway
cgoi03030
DNA replication
cgoi03410
Base excision repair
cgoi03420
Nucleotide excision repair
cgoi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cgoi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CGOTT_05035 (ligA)
03410 Base excision repair
CGOTT_05035 (ligA)
03420 Nucleotide excision repair
CGOTT_05035 (ligA)
03430 Mismatch repair
CGOTT_05035 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cgoi03032
]
CGOTT_05035 (ligA)
03400 DNA repair and recombination proteins [BR:
cgoi03400
]
CGOTT_05035 (ligA)
Enzymes [BR:
cgoi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CGOTT_05035 (ligA)
DNA replication proteins [BR:
cgoi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CGOTT_05035 (ligA)
DNA repair and recombination proteins [BR:
cgoi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CGOTT_05035 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CGOTT_05035 (ligA)
MMR (mismatch excision repair)
DNA ligase
CGOTT_05035 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CGOTT_05035 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH_5
PTCB-BRCT
BRCT_2
HMBD
Motif
Other DBs
NCBI-ProteinID:
WJZ12950
LinkDB
All DBs
Position
1080258..1082321
Genome browser
AA seq
687 aa
AA seq
DB search
MTTPEPDVPSPERLEDLQRTWSEMADEVRHHRDLYYNGQPVISDAEFDALFRRLQELEKE
HPELAVPDSPTKEVGAPTAASSAFADVTHLERMYSLDNVFSAEELAEWLDKTPGPYLTEL
KIDGLSIDLVYRDGVLERAATRGDGTTGEDITANARVIEDIPHELAGDAPALLEVRGEVF
IRPEDFPELNEQRMKEGGKPFANPRNTAAGGLRQKNPADVKKRKLRMICHGIGARDGFAP
ETQHDAYLKLAEWGLPVSEYTKPAKTAKDVQDAVKYWADHRHDAIHEMDGLVIKVDSVAA
QRQLGSTSRAPRWAIAYKYPPEEVTTTLKDIQVSVGRTGRATPYAVLEPVFVSGSTVSMA
TLHNQHEVKRKGVLIGDTVVVRKAGEIIPEVLGPVADLRDGSEREFVYPEDCPVCGTKLA
PAKEGDADWRCPNTRSCPAQLSARLEYLASRGAFDIEALGEKGAQDLIASGVLIDEAALF
DLTEDDLKKSNAYTRKDGQVNAAGKKLLANLETAKQVDFWRVLVALSIRHVGPTAARALA
ARYKSMQALLDAPLSDLAETDGVGQIIAESFKDWFTVDWHQAIVDSWTKAGVRMEDDHDA
DATPHTLEGLTVVVTGTLEGFSRDSAKEAILTRGGKASGSVSKKTDYVVVGENAGSKEQK
ARDLGRPILTEEQFVTLLEEGPDALSR
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgactacacctgagccagacgtaccgtcgcccgagcgcctcgaggacctgcagcgcacg
tggagcgagatggcggacgaggtccgtcaccaccgcgacctgtactacaacgggcagccc
gtcatctccgacgcggagttcgacgccctgttccgtcggctgcaggagctcgaaaaggag
caccccgagcttgccgtgccggactcgccgaccaaggaggtcggcgcacccacggccgcg
tcctccgcgttcgcggacgtgacgcacctggagcgcatgtacagcctggataacgtgttc
tcggccgaagagctcgctgagtggctggacaagacccccggcccgtacctcaccgagctg
aagatcgacgggctgtccatcgacctggtctaccgcgacggtgtcctcgagcgtgccgcc
acccgcggcgacggcaccacgggtgaggacatcaccgccaacgcccgcgttatcgaagac
atcccgcacgagcttgccggcgacgcccccgcgctgctggaggtccgcggcgaggtgttc
atccgccccgaggacttcccggagctcaacgagcagcgcatgaaggagggcggcaagccg
ttcgcaaacccgcgcaacacggcggccggtggcttgcgccagaagaacccggcggacgtg
aagaagcgcaagctgcgcatgatctgccacggcatcggcgcccgcgacggcttcgcaccg
gagacgcagcacgatgcctacctcaagctcgcggagtggggcctgccggtgtccgagtac
accaagcccgccaagaccgccaaggacgtccaggacgcggtgaagtactgggcggaccac
cgccacgatgccatccacgagatggacggtctggtgatcaaggtcgatagcgtggcagcg
cagcgccagctcggctccacctcccgcgcgccgcgctgggccatcgcgtacaagtacccg
ccggaagaagtcaccaccacgctcaaagacatccaggtctcggtcggccgtaccgggcgc
gcgaccccgtacgcggtcctcgagccggtcttcgtctcaggctccacggtgtccatggcc
accctgcacaaccagcacgaggtcaagcgtaaaggcgtgctcatcggcgacacggtcgta
gtgcgcaaggccggcgagatcatccccgaggtgctcgggcccgtcgcggacctgcgcgac
ggttcagagcgcgagttcgtctaccccgaggactgcccggtgtgcggcacgaaactcgcc
cccgcgaaggagggcgacgcggactggcgctgcccgaatacccgctcgtgcccggcgcag
ctgtcggcacgcctggagtacctcgcctcgcgcggcgcattcgacatcgaggcgctcggc
gagaagggcgcccaggacctcatcgcctcgggcgtgctcatcgacgaagccgcgctcttc
gacctcaccgaagacgacctgaagaagtccaacgcctacacgcgcaaggacggccaggtc
aacgccgccggcaagaaactgctggccaacctcgaaaccgccaagcaggtcgacttctgg
cgcgtgctcgtcgccctgtccatccgccacgtcgggcccaccgccgcccgcgcgctcgcc
gcccgctacaagagcatgcaagcgcttctcgacgcccccttgtccgacctcgccgaaacc
gatggcgtcgggcagatcatcgccgaatccttcaaggactggttcaccgtggactggcac
caggccatcgtggactcctggacgaaagcgggggtacgcatggaagacgaccacgacgcc
gacgccaccccgcacaccctcgagggcctcaccgtcgtcgtcaccggcaccctcgaaggc
tttagccgagactccgccaaggaagcgatcctcacccgcggcggcaaggcctccggctcg
gtgtccaagaagaccgactatgtcgtcgtgggggagaatgccgggtccaaggaacaaaaa
gcccgcgacctgggccgcccgatcctcaccgaggagcagttcgtgaccttgctggaggaa
gggccggacgccctgtctcgctag
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integrated database retrieval system
