Corynebacterium genitalium: KBP53_05035
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Entry
KBP53_05035 CDS
T10365
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cgp Corynebacterium genitalium
Pathway
cgp03030
DNA replication
cgp03410
Base excision repair
cgp03420
Nucleotide excision repair
cgp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cgp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KBP53_05035 (ligA)
03410 Base excision repair
KBP53_05035 (ligA)
03420 Nucleotide excision repair
KBP53_05035 (ligA)
03430 Mismatch repair
KBP53_05035 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cgp03032
]
KBP53_05035 (ligA)
03400 DNA repair and recombination proteins [BR:
cgp03400
]
KBP53_05035 (ligA)
Enzymes [BR:
cgp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KBP53_05035 (ligA)
DNA replication proteins [BR:
cgp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KBP53_05035 (ligA)
DNA repair and recombination proteins [BR:
cgp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KBP53_05035 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KBP53_05035 (ligA)
MMR (mismatch excision repair)
DNA ligase
KBP53_05035 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KBP53_05035 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
Nlig-Ia
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
DUF4796_N
DUF8512
HMBD
HHH
BRCT_2
Dsc3_N
Rab11-FIP3
Motif
Other DBs
NCBI-ProteinID:
UUA90317
LinkDB
All DBs
Position
1030182..1032206
Genome browser
AA seq
674 aa
AA seq
DB search
MTEAQVSEDLLRQWNELAKEVRRHRDLYYNGDPVITDAEFDEMFRRLQQLEEDHPELAVP
DSPTKEVGAAPTSTAFEDVEHLEPMMSLDNVFSAEELSDWLTKTPGPYLTELKIDGVSID
LVYENGQLTRAATRGDGRVGENITANARVIDDIPHELTGDFPALLEVRGEVFIRPEDFPE
LNELRQKEGGKPFANPRNTAAGGLRQKDPEKVRNRKLRMICHGIGAREGVEFSSQHDAYE
KLAAWGLPVSEYTKRAETAEEVQKTVEYWADHRHDAIHEMDGLVIKVDDLAAQRQLGFTS
RAPRWAIAYKYPPEEVTTKLKDIAVSVGRTGRATPFAVLEPVFVSGSTVSMATLHNQHEV
KRKGVLIGDTVVVRKAGEIIPEVLGPVADLRDGTEKEFVFPENCPVCGTKLAPAKEGDAD
WRCPNTRSCPAQLGQRLEYLASRGAFDIEALGEKGAQDLIASGVLIDEGDLFTLTESDLE
KSSVYTTKAGTVNASGKKLLANLEQAKEKELWRVLVALSIRHVGPTAARALASRYGSMGK
LLDASVDDLADTDGVGGIIAESFKEWFEVEWHRDIVRKWGAAGVNMEDEASDLEQTLEGL
TVVVTGSLENFSRDGAKEAILSRGGKAAGSVSKKTDYVVVGENAGSKETKARDLGITILD
EDQFRTLLETGDAE
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
gtgactgaagctcaagttagtgaagacctgctgcgccagtggaacgagctggcgaaggag
gtccgccgccaccgcgacctctactacaacggcgaccccgtgatcacggacgcggagttc
gacgagatgttccgccggctgcagcagctggaggaggatcacccggagctcgctgtgcct
gactcgccaacaaaggaagtcggcgcggcacccacgagcacggcattcgaggatgtcgag
caccttgagccgatgatgagcttggacaatgtgttttccgccgaggagttgtccgactgg
ttgaccaagaccccaggcccgtatctcaccgagctgaagatcgacggtgtgtccattgac
ttggtttacgaaaacggccaacttacccgcgctgccactcgcggcgatggcagggtgggg
gaaaacatcaccgctaacgcccgcgtcatcgacgacattccgcacgagctcaccggtgac
ttcccggcattgttggaggtccgcggtgaggtgttcatccgcccggaggacttcccggag
ctcaacgagctgcgccagaaagagggcggcaagccttttgctaacccccgcaacacggca
gccggcggcctgcgtcagaaggatccggagaaggtccgcaaccgtaagctgcgcatgatc
tgccacggcatcggcgcccgcgagggggttgagttctcctcgcagcatgatgcctacgag
aagctcgcggcgtggggtttgcccgtcagtgaatacaccaagcgagcggagactgccgag
gaagtgcagaaaaccgtcgagtactgggccgatcaccgccacgacgcgatccacgagatg
gacggcttggtgatcaaggtcgacgatctagctgcccagcgccagctcggctttacttcc
cgcgccccgcgctgggcgatcgcctacaagtacccgccggaagaggtgaccacaaaactc
aaggacatcgccgtgtccgttggccgcaccggccgcgctacgccgttcgcggtgctcgag
ccggtgtttgtgtccggatcgacggtatccatggccacgctgcacaaccagcacgaggtc
aagcgcaagggcgtgctgatcggcgacaccgtcgtcgtccgcaaggcaggggagatcatc
ccggaggtccttggccctgtcgccgacctgcgtgacggcactgagaaggagttcgtcttc
ccggagaattgcccggtgtgtggcacgaagcttgctcccgccaaggaaggcgatgctgac
tggcgctgcccgaacacccgctcgtgtcccgctcagctcggccaacgcttggagtacctc
gcgtcccgcggcgcgttcgacatcgaagcgctcggtgagaagggtgcgcaagacctcatc
gcttcgggcgtgcttatcgacgaaggcgaccttttcaccctcaccgaatccgaccttgag
aagtcctcggtgtacaccaccaaggccggcacagtgaacgcctccggcaagaagctgttg
gccaatctcgagcaggccaaggaaaaagagctgtggcgtgtcctcgtcgcgttgtcgatc
cgccacgtcggtccgacagctgcccgggcgctcgcatcgcgctacggaagcatgggaaag
cttctcgacgcttccgtcgacgacctcgccgacaccgacggcgtgggcggaatcatcgcc
gagtcgttcaaggagtggttcgaggtcgagtggcaccgcgacatcgtgcgcaagtggggg
gccgccggtgtgaacatggaggacgaggcctccgatctcgagcagaccctcgaagggttg
acggttgtggtgaccggatcgctggagaacttcagtcgcgacggtgcgaaagaagcgatc
ctctcgcgcggcggcaaggcggctggctccgtgtcgaagaagactgactacgtagtggtc
ggggagaacgcggggtccaaggagacaaaggcgcgggaccttggcatcacaatcctcgac
gaagatcagttccggacactccttgagaccggtgatgcagaatag
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integrated database retrieval system
