Cutibacterium granulosum: 4412665_01631
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Entry
4412665_01631 CDS
T05425
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cgrn
Cutibacterium granulosum
Pathway
cgrn03030
DNA replication
cgrn03410
Base excision repair
cgrn03420
Nucleotide excision repair
cgrn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cgrn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
4412665_01631 (ligA)
03410 Base excision repair
4412665_01631 (ligA)
03420 Nucleotide excision repair
4412665_01631 (ligA)
03430 Mismatch repair
4412665_01631 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cgrn03032
]
4412665_01631 (ligA)
03400 DNA repair and recombination proteins [BR:
cgrn03400
]
4412665_01631 (ligA)
Enzymes [BR:
cgrn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
4412665_01631 (ligA)
DNA replication proteins [BR:
cgrn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
4412665_01631 (ligA)
DNA repair and recombination proteins [BR:
cgrn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
4412665_01631 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
4412665_01631 (ligA)
MMR (mismatch excision repair)
DNA ligase
4412665_01631 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
4412665_01631 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
HHH
Nlig-Ia
UPF0758_N
PTCB-BRCT
HHH_3
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
SNV38071
UniProt:
A0A239WUA8
LinkDB
All DBs
Position
1:complement(1885301..1887823)
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AA seq
840 aa
AA seq
DB search
MILRGCLALAGLTMSPAAVRKNGGMTDPTEHVDTELADERAADEGVADAMTKATGSGSTG
PDGTEPDAAGLEHTDEQADLRHRWGQLVRQILDAQDAYYGSDAPTISDAAYDELMASLKS
LEDDHPELRVPDSPTQRVGAPQRVTEFAPVQHLERLLSLDNVFNRDEMATWLSRTTEAAD
APVRLLCELKIDGLAVDLVYRRGRLVSGATRGDGRVGEDVTANVRAIKAIPTRLRGVDVP
DLLEVRGEVFFPVADFESLNAALVEQGRNPFANPRNAAAGSLRQKDSSVTATRPLSMIVH
GLGAVEGLDVTSQAQMYEKLSAWGLPVSPYYQLVDTPDEVFDFIAHWGEHRHDASHQIDG
VVVKIDEVATQKRLGATSRAPRWAIAYKYPPEEVNTRLLDIQVNVGRTGRVTPFGVMEPV
TVAGSTVEMATLHNGFEVKRKGVLIGDTVVLRKAGDVIPEILGPVVELRDGTEREFVMPT
HCPACGTELRYEKDGDKDLRCPNARSCPSQLRERVFALGSRQALDVESLGWEAAIALTNP
EESRPAPDGHGAGDPARGSCSSAGDETVGAANDGAGASGDSTDGADSADRTGELPAPQTP
LLASEAGLFDLTVDDLMDVKVWRQRKTKAGPGPWQLEPFFATRATATRPAAPNATARKLV
AELDKAKSQPLWRVLVALSIRHMGPTAARSVAARFGSIDALARASVDELSEVDGVGPVLA
ASIVAWFEVDWHREIIERWRAAGVRMADDTDDTAPQTLEGLTVVVTGSLEGFTRDEAKEA
IVSRGGKAAGSVSRKTDYVVVGENAGSKETKARELGRPILDESGFRHLLEHGPRAVPTIA
NT seq
2523 nt
NT seq
+upstream
nt +downstream
nt
atgattctgcgcggctgtctggctctcgccgggctgaccatgtcccccgctgcagtgcgc
aagaatggaggcatgactgatcccaccgagcatgtggacaccgagctggcggacgaaaga
gctgccgacgagggagttgcggacgcgatgacgaaggccaccgggtctgggagcactgga
cctgacggcaccgagccggacgccgctggcctggagcacaccgacgaacaggccgatctg
cgccaccgctgggggcaactcgtccgccagatcctcgacgcccaggacgcctactacggt
tccgacgctccgacgatctccgacgccgcctacgacgagctcatggccagcctcaagtca
ttggaggatgaccatcccgagctgcgagtgcccgactcgcccactcagcgggtcggggca
cctcagcgggtcaccgagttcgccccggtgcagcacctggagcggttgctcagtctggac
aacgtcttcaatcgcgacgagatggcgacctggctgtctcgcaccaccgaagctgccgac
gcaccggtgcgacttctctgcgaactcaagatcgatgggctcgccgtcgatctggtgtac
cgacgaggacgtctggtgagcggtgccactcgtggcgacggccgggtcggggaggacgtc
accgccaatgtacgagccatcaaggccatccccacgcgacttcgcggtgtggatgtgccc
gatctgctcgaggtgcgcggcgaggtgttcttccccgtggccgacttcgagagtctcaac
gccgccctggtggagcaggggcgcaacccgttcgccaatccacgcaatgctgctgccggg
tcgctgcgtcagaaggattcctcggtcaccgcaacccgtccactgtcgatgatcgtgcac
ggcctgggggccgtggagggactcgacgtcacgagtcaggcgcagatgtacgagaaactc
tctgcctgggggctgcccgtctcgccgtactaccagctcgtcgacactcctgacgaggtc
ttcgacttcatcgcacactggggcgaacaccgacacgacgcgagtcaccagatcgacggg
gtcgtcgtgaagatcgacgaggtggccacccagaaacggctgggagccacctcacgggca
ccgcgctgggccatcgcctacaagtacccacccgaggaggtcaacaccaggctgctcgac
atccaggtgaacgtggggcgcaccggccgggtgacgcccttcggggtgatggaacccgtg
acggtcgccggatccaccgtggagatggccaccctgcacaacggcttcgaggtcaaacgc
aagggggtgctcatcggtgacaccgtcgtactgcgcaaggccggcgacgtcatccccgag
atcctgggcccagtcgtcgaactgcgtgacggcaccgagcgagagttcgtcatgccgacc
cattgcccagcctgcggcaccgagctgcgctacgagaaggacggcgacaaggatttgcgc
tgccccaatgcgcgcagctgcccctcacagttgcgcgaacgagtgttcgccctgggatcc
cgacaggccttggacgtcgagtcgctcgggtgggaggcggcgatcgccctcaccaacccc
gaggagtcccggcccgcccccgatggccacggtgcaggagacccagcccggggcagctgc
agttcagctggtgacgagacggttggcgccgccaatgatggtgccggggcgagcggggac
agcaccgatggtgccgactcggccgaccgcaccggcgagctgcccgccccgcagaccccg
ctgctcgccagtgaggcaggtctgttcgacctcaccgtcgacgacctcatggacgtcaag
gtctggcggcagcgcaagaccaaggccggtcccggtccttggcagctcgaaccgttcttc
gccacccgggccacggccaccaggccggccgcccccaatgccaccgcccgcaagctcgtc
gcggaactggacaaggccaagtcccagccgctgtggcgggtgctggtggccctgtcgatc
cggcacatgggccccaccgcagcccgcagcgttgccgcacgattcggctccatcgacgcc
ctggcacgggccagcgtcgacgaactctccgaggtggacggggtgggcccggtgctggcg
gcctccatcgtcgcctggttcgaggtggactggcaccgcgagatcatcgagcggtggcgt
gcagccggggtgcgcatggccgacgacaccgacgacaccgcgccacagaccttggagggt
ctcacggtcgtcgtcaccgggtcgttggagggattcacccgtgacgaggccaaggaggcg
atcgtcagtcgcggtggcaaggcagccggatcggtctcacgcaagaccgactacgtcgtc
gtcggggagaatgccggttccaaggagaccaaggcccgcgaactcggcaggccgatcctt
gacgagtccgggttccgacacctgctcgaacacggtccccgggcagtgccgacgatcgcc
tga
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