Corynebacterium glutamicum K051: WA5_1196
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Entry
WA5_1196 CDS
T02508
Symbol
LigA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cgu
Corynebacterium glutamicum K051
Pathway
cgu03030
DNA replication
cgu03410
Base excision repair
cgu03420
Nucleotide excision repair
cgu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cgu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
WA5_1196 (LigA)
03410 Base excision repair
WA5_1196 (LigA)
03420 Nucleotide excision repair
WA5_1196 (LigA)
03430 Mismatch repair
WA5_1196 (LigA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cgu03032
]
WA5_1196 (LigA)
03400 DNA repair and recombination proteins [BR:
cgu03400
]
WA5_1196 (LigA)
Enzymes [BR:
cgu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
WA5_1196 (LigA)
DNA replication proteins [BR:
cgu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
WA5_1196 (LigA)
DNA repair and recombination proteins [BR:
cgu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
WA5_1196 (LigA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
WA5_1196 (LigA)
MMR (mismatch excision repair)
DNA ligase
WA5_1196 (LigA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
WA5_1196 (LigA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
CCH24416
LinkDB
All DBs
Position
1308329..1310371
Genome browser
AA seq
680 aa
AA seq
DB search
MTEDNAQLRRTWNDLAEKVRYHRDRYYNEQPEIPDADFDALFKQLQQLEEDHPELAVPDS
PTMVVGAPVAEQSSFDNVEHLERMLSLDNVFDEQELRDWLGRTPAKQYLTELKIDGLSID
LVYRNGQLERAATRGDGRVGEDITANARVIEDIPHQLQGTDEYPVPAVLEIRGEVFITVE
DFPEVNAQRIADGGKPFANPRNAAAGSLRQKNIEDVKKRRLRMISHGIGFTEGFSPASQH
DAYLALAAWGLPTSPYTEAVTDPEDVVKKVSYWADHRHDALHEMDGLVIKVDDIASQRAL
GSTSRAPRWAIAYKYPPEEVTTKLLDIQVGVGRTGRVTPFAVMEPVLVAGSTVSMATLHN
QSEVKRKGVLIGDTVVIRKAGEVIPEVLGPVVELRDGTEREYIFPTLCPECGTRLAPAKA
DDVDWRCPNMQSCPGQLSTRLTYLAGRGAFDIEALGEKGAEDLIRTGILLDESGLFDLTE
DDLLSSNVYTTNAGKVNASGKKLLDNLQKSKQTDLWRVLVALSIRHVGPTAARALAGRYH
SIQALIDAPLEELSETDGVGTIIAQSFKDWFEVDWHKAIVDKWAAAGVTMEEEVGEVAEQ
TLEGLTIVVTGGLEGFTRDSVKEAIISRGGKASGSVSKKTDYVVIGENAGSKATKAEELG
LRILDEAGFVRLLNTGSADE
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
gtgactgaagataatgctcaactgcgtagaacgtggaacgacttagccgagaaggttcgt
tatcaccgagatcgttattacaacgaacagccagagatccctgatgctgattttgatgcg
ctttttaagcagcttcagcagttggaagaagaccacccggagctcgccgtccctgatagc
cccaccatggttgtgggcgctccggtggcagagcaatcaagctttgacaatgttgagcac
ttggagcgaatgctcagcttggacaatgtttttgatgagcaggagttgcgtgattggttg
ggcaggacgccagccaagcagtatttgacggagttgaaaattgatggcttgtccatcgac
ttggtgtatcgcaatggccagttagagcgtgccgctactcgtggtgatggtcgcgtgggc
gaggacatcacggccaatgctcgcgtgatcgaagatatcccgcaccagcttcagggcact
gatgaatatcctgtgcctgctgtgctggaaattcgcggtgaggtgttcatcactgtggag
gatttcccagaggtcaacgcgcagcgcattgctgatggtggcaagccgtttgccaacccg
cgtaatgctgcggctggttctctgcgtcagaaaaatattgaggacgtgaagaagcgccgc
ctgcggatgatcagccatggcatcggtttcactgaaggctttagccctgcgtctcagcat
gatgcgtatctggcattggctgcctggggtttgcccacctcgccgtacacagaggctgtg
actgatccagaagatgtggtgaaaaaggtcagctactgggctgatcaccgccacgacgca
ctccatgagatggatggcctggtgattaaggtcgatgacatcgcatctcagcgtgctttg
ggttccaccagccgcgcgcctcgctgggccattgcgtacaagtaccctccggaggaggtc
accaccaagctgcttgatattcaggttggcgttggtcgcaccggccgtgtcaccccattc
gcggtcatggagccggttcttgttgcaggatcaacggtgtctatggcgacgctgcataac
cagagcgaagtcaagcgtaaaggcgtgctcatcggtgacaccgtggttatccgcaaggcg
ggcgaggttatcccagaggtgcttggccctgtcgtagagcttcgtgacggcacagagcgc
gagtacatcttcccaacgctgtgccctgaatgcggtacccgtctggcgcccgcgaaggcc
gatgacgtggattggcgttgccccaacatgcaaagctgtccaggtcagctgtccacgcgt
ttgacctaccttgctggtcgtggcgcttttgatattgaagcattgggcgaaaagggcgct
gaagacctcattcgcaccggcattttgcttgacgagtctggcctgttcgacctcacagag
gacgatctgctgagctccaatgtctacaccaccaacgccggcaaagtaaatgccagcggc
aagaaactgctggacaacctgcaaaaatccaagcagaccgacctctggcgagtcctcgtg
gcattatctatcaggcacgtaggccccaccgcagcgcgcgcccttgcaggtcgctaccac
tccatccaggcgcttatcgacgcccccctcgaggaactctccgaaaccgatggagtaggt
accatcattgcccaatccttcaaggactggttcgaggttgattggcacaaggccatcgtg
gacaagtgggcagccgctggtgtgactatggaggaagaagtaggggaggtcgctgaacaa
acccttgaaggcctaaccatcgtggtcaccggagggttggaaggcttcaccagagattcg
gtgaaggaagccatcatctcccgtggcggaaaagcctctggatctgtctcgaagaaaact
gactacgtggtgattggtgaaaacgcaggttccaaggccaccaaggcagaagaactaggg
ctgcgcattctggatgaggcaggattcgtccgtttgctcaataccggctcagctgacgaa
tag
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