Candidatus Campbellbacteria bacterium GW2011_OD1_34_28: UR58_C0001G0098
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Entry
UR58_C0001G0098 CDS
T04488
Name
(GenBank) ligase, DNA ligase (NAD+) protein
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cgw
Candidatus Campbellbacteria bacterium GW2011_OD1_34_28
Pathway
cgw03030
DNA replication
cgw03410
Base excision repair
cgw03420
Nucleotide excision repair
cgw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cgw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
UR58_C0001G0098
03410 Base excision repair
UR58_C0001G0098
03420 Nucleotide excision repair
UR58_C0001G0098
03430 Mismatch repair
UR58_C0001G0098
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cgw03032
]
UR58_C0001G0098
03400 DNA repair and recombination proteins [BR:
cgw03400
]
UR58_C0001G0098
Enzymes [BR:
cgw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
UR58_C0001G0098
DNA replication proteins [BR:
cgw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
UR58_C0001G0098
DNA repair and recombination proteins [BR:
cgw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
UR58_C0001G0098
NER (nucleotide excision repair)
GGR (global genome repair) factors
UR58_C0001G0098
MMR (mismatch excision repair)
DNA ligase
UR58_C0001G0098
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
UR58_C0001G0098
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
Nlig-Ia
BRCT
HHH_5
PTCB-BRCT
HHH
BRCT_2
HHH_3
Bep_C_terminal
Motif
Other DBs
NCBI-ProteinID:
AKM83815
LinkDB
All DBs
Position
complement(110454..112457)
Genome browser
AA seq
667 aa
AA seq
DB search
MKVSKDVETRIKKLREAIDYYRYLYHIENRQEISDEALDSLKNELYKLEQEYPELITPDS
PTQRVEGKPLKEFKKVTHKVQQWSFNDAFTEEDMEDFDTRVKRFLGGNKKPTYTCELKID
GLKIVLEYEKGLLKTAVTRGDGKVGEDVTLNVKTIESVPLRLKKDIDIIVEGEIWMSKKN
FEKLNKTQEKRGEKIFANPRNVSAGTIRQLDPKIVAERKLDCFIYDIASLEDEVPSRQFD
ELKLLGDLGFKVNKNFKHCKNINEAISFWKEWQGKKEIQDYWIDGVVIKVDEKKYQDSLG
YTGKAPRFGIAFKFPAEQVTTVVEDIVLQVGRTGVLTPVAHLKPVSVAGSVVSRATLHNE
DEIKRLDVRIGDTVILQKAGDVIPQVVSVLKEMRTGKEKIYHYPEYVEACGGDGKIEKII
GQVAYRCVNKNSFEQQKRKFYHFVSKKAYDIDGMGPSIIDVLLEENLISSYDDIFSLKKG
DLLALPRFAEKSVNNLLSAIEKAREVELSRFLMGLSIDQVGEETTIDLAKHFGSLEKIQN
ASLEDLESVYGIGDVVAKSIYDWFRDKKNLHLLEKLFKQVKIKTGLGPTQSKGKLEGKKF
VLTGTMENMGRDEAKTKIRALGGDISSSVSKAVDYVVAGENPGSKYDKAVELGVKVLSEE
EFLRLIK
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtatcaaaggatgtggaaacaagaataaaaaaattgagagaagcgatagattac
tatcgctatctttatcatattgaaaacagacaagagatttccgacgaggcattggattct
ttgaaaaatgaattatacaaactggaacaggaatatcccgaattgattactcccgattct
ccaacacagagagtagaaggaaaaccgctaaaagaatttaaaaaagtcactcacaaagtt
cagcagtggtcttttaacgatgcttttaccgaagaagacatggaggattttgatacacga
gtaaaaagatttttggggggaaacaaaaaaccgacttatacttgtgaattaaaaatagac
ggacttaaaattgttttggaatacgaaaaaggattgttgaaaaccgcagtaaccagagga
gatggaaaggtgggcgaagatgtgacccttaatgtaaagacgatagagtctgttccttta
agattgaaaaaagacatagatattattgtagaaggcgagatttggatgagtaagaaaaat
tttgagaaattgaacaagacccaagaaaaaaggggagagaaaatttttgcaaatccccga
aatgtttcggcagggacaattcgtcagctggatccaaaaattgtcgcagagagaaagttg
gattgttttatctacgacattgcttctctagaagacgaggttccaagtagacaatttgat
gaactgaaactattgggggatctgggtttcaaggtaaataagaattttaaacattgtaaa
aatattaacgaagcgatttctttttggaaagaatggcaagggaaaaaagagattcaagat
tattggatagacggagtagtaataaaagtagacgagaaaaaatatcaagactctttaggt
tatacgggcaaagcaccccgttttggaattgctttcaagtttcctgctgaacaggtgact
actgttgtagaagatattgttttacaagtaggaagaactggtgttttgacacctgttgct
catttgaaacctgtttctgtggcagggtctgttgtgtcgcgtgcaactttgcacaacgaa
gacgaaataaaaagattggatgtgagaattggtgatactgttattttgcaaaaagcgggg
gatgttattccacaggttgtttctgtcttgaaagaaatgaggacgggtaaagaaaaaata
tatcactatccagaatatgtagaagcgtgtggaggagatggaaaaattgaaaaaatcatc
ggacaagtggcttatcgctgtgtaaataaaaattcttttgagcaacaaaagagaaagttt
tatcactttgtttctaaaaaagcgtacgacatagacggtatgggcccaagtattatagat
gttttgttggaagaaaacctgatttcctcatacgatgatattttttctttgaagaaagga
gatttgttggcgttgccaaggtttgcagaaaagtctgtgaacaatttgttatctgcgatt
gaaaaggcgagagaggttgaattgtctaggtttttgatggggctttctattgatcaggtg
ggtgaagaaacaacaattgatttagcaaagcattttggatcattggaaaaaatacaaaat
gccagtttggaagatttggaaagtgtatatggaataggggatgtggtcgcaaaatctatt
tatgattggtttcgtgataaaaagaatttacacttgttggaaaaacttttcaaacaagta
aaaattaaaactggactgggtccgacccagtccaaagggaaattagagggaaagaaattt
gttttgacagggacgatggaaaatatggggagggacgaagcaaagacaaaaatccgtgca
ctgggcggggatatttctagtagtgtgtccaaagcggttgattatgttgtggcaggggaa
aatccgggatcaaaatatgacaaagcagtggagttgggagtgaaggttttgagtgaagaa
gaatttttgagattgataaaataa
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