Campylobacter hominis: CHAB381_1017
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Entry
CHAB381_1017 CDS
T00577
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cha
Campylobacter hominis
Pathway
cha03030
DNA replication
cha03410
Base excision repair
cha03420
Nucleotide excision repair
cha03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CHAB381_1017 (ligA)
03410 Base excision repair
CHAB381_1017 (ligA)
03420 Nucleotide excision repair
CHAB381_1017 (ligA)
03430 Mismatch repair
CHAB381_1017 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cha03032
]
CHAB381_1017 (ligA)
03400 DNA repair and recombination proteins [BR:
cha03400
]
CHAB381_1017 (ligA)
Enzymes [BR:
cha01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CHAB381_1017 (ligA)
DNA replication proteins [BR:
cha03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CHAB381_1017 (ligA)
DNA repair and recombination proteins [BR:
cha03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CHAB381_1017 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CHAB381_1017 (ligA)
MMR (mismatch excision repair)
DNA ligase
CHAB381_1017 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CHAB381_1017 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
HHH_5
PTCB-BRCT
DNA_ligase_ZBD
Nlig-Ia
BRCT_2
HHH
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
ABS51677
UniProt:
A7I236
LinkDB
All DBs
Position
complement(955238..957175)
Genome browser
AA seq
645 aa
AA seq
DB search
MSEAEYLKAVEMLNIWAKAYYTQDNPLATDIEYDVLYKKVETFENEFPDLKVSYSPTNRV
GDAVSEGFEKINHKAKMWSMEDIFDDNELLAWLERGEKAGLEFFVEPKFDGASLNLTYEN
GVLISAGTRGNGETGENVTQNVKVINSIPLQIDYKEKIEIRGEVVIAKSDFDALNDERAN
SGENLFANPRNAAAGSLRQLDSAVVKSRHLKFFPWDVGENSLNFKKHSEIMEFVRNLGFL
KDDFVRVCASLTDLRKAYVDLHEMRERKDILMDGMVIRINELTKCENMGYTIKFPRFMVA
YKFPPVEKATKLIDINLQVGRTGVITPVGVLEPVNIDGATVRNATLHNFDEIARLGLMKG
DIVSIIRSGDVIPKITGVFGARRNGSETPIKRPEFCPVCGSRLLVEDIFIRCQNLTCKAR
IVNSLIYFCSKKCMNIDGLGEAIINTLFEKGKIINISDIYTLKADDLEGLEGFKDKKISN
LLASIENSRISPLYRFITALGIEHIGEVAARKIAEIFGENWLNASFDEILKIDGFGEAMA
KSFVGFCEINREKIENLLSFLHLSAQKTEISQNVFTKKTVVITGTLSISRDEMKEKLIKM
GANVTNSVSKKTDFVLFGKDAGSKLEKAKMLGVKAISEDEFKEML
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaagccgaatatctaaaagcggtggaaatgctcaatatatgggcaaaagcttat
tatacgcaagataatcctttagctacggacatcgaatatgacgtgctttataaaaaagtc
gaaacttttgaaaatgagtttcctgatttaaaagtttcctattcgcctactaatcgcgtg
ggagatgccgtaagcgaaggttttgaaaagataaatcacaaagcgaaaatgtggtctatg
gaggatatttttgatgataacgagcttttggcttggcttgaacgcggcgaaaaagcaggt
ttggaatttttcgttgagccgaaatttgacggagcaagtttaaatttaacttatgaaaac
ggcgttttaatttcggcaggaacgcgcggaaatggtgaaacaggcgaaaatgtaacgcaa
aatgtgaaagttattaactctattcctttgcaaatcgattataaagaaaaaattgaaatc
agaggcgaagtcgtaatcgctaaaagtgactttgacgcacttaatgatgagcgtgcaaac
agcggtgaaaatctttttgcaaatcctagaaatgcggcagccggaagtcttcgccaactt
gacagcgccgtggtaaaatcgcgccatttaaaattttttccttgggatgtcggagaaaat
tctctaaattttaaaaaacacagtgaaattatggagtttgtgcgaaatttaggcttttta
aaagatgattttgtaagagtttgcgcttctttaacggatttaagaaaagcctatgtggat
ttacacgaaatgcgagaacgtaaagatattttaatggatggaatggtaattcgtataaat
gaacttacaaaatgtgaaaatatgggttatacaattaaatttccacgctttatggtcgcg
tataaatttccgcctgtcgaaaaagcgactaaacttatcgatataaatttacaagtcggc
cgcacaggtgtaatcacgcccgtaggagttttggagcctgtaaatatagatggcgcaaca
gtgcgaaacgccacacttcacaatttcgatgaaatcgcgcgtcttgggcttatgaaaggc
gatatcgtaagtataatacgaagcggcgatgtaattcctaaaatcacaggcgttttcggt
gcgcgcagaaatggaagtgaaacgccgataaaaagaccggagttttgtcctgtttgcgga
agcagacttttggtggaagatatttttataagatgtcaaaatctcacttgcaaagcgcgt
attgtaaattcgctgatatatttttgctctaaaaaatgtatgaatatagacggtcttggc
gaagctatcataaatacactttttgaaaaaggtaaaattataaatatatcggacatttac
acattgaaagctgatgatttggaaggacttgaaggatttaaagacaaaaaaatttcaaat
cttttagcatctattgaaaatagtaggatttcaccactttataggtttattacagcactt
ggaatcgaacatataggcgaagtggccgccagaaaaatcgctgaaatttttggcgaaaat
tggctgaatgcaagttttgatgaaattttaaaaatcgacggattcggtgaagcgatggcg
aaaagttttgtcggtttttgtgagataaatcgcgaaaaaattgaaaatttactttctttt
ttgcatttaagcgcccaaaaaactgaaatttcacaaaatgttttcacaaaaaaaactgtt
gtaattacaggaactctcagcatttcgcgcgacgagatgaaagaaaaactcatcaaaatg
ggtgcaaatgtaacaaactccgtttctaaaaaaacggatttcgtgctttttggaaaagat
gccggaagtaagcttgaaaaagcaaaaatgcttggcgtaaaagcgataagcgaagatgag
tttaaggaaatgctttga
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