Corynebacterium hadale: CHAD_05355
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Entry
CHAD_05355 CDS
T09187
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
chad
Corynebacterium hadale
Pathway
chad03030
DNA replication
chad03410
Base excision repair
chad03420
Nucleotide excision repair
chad03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
chad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CHAD_05355 (ligA)
03410 Base excision repair
CHAD_05355 (ligA)
03420 Nucleotide excision repair
CHAD_05355 (ligA)
03430 Mismatch repair
CHAD_05355 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
chad03032
]
CHAD_05355 (ligA)
03400 DNA repair and recombination proteins [BR:
chad03400
]
CHAD_05355 (ligA)
Enzymes [BR:
chad01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CHAD_05355 (ligA)
DNA replication proteins [BR:
chad03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CHAD_05355 (ligA)
DNA repair and recombination proteins [BR:
chad03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CHAD_05355 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CHAD_05355 (ligA)
MMR (mismatch excision repair)
DNA ligase
CHAD_05355 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CHAD_05355 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH_5
PTCB-BRCT
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
WKC59954
LinkDB
All DBs
Position
1143130..1145193
Genome browser
AA seq
687 aa
AA seq
DB search
MTTPEPDVPSPERLEDLQRTWSEMADEVRHHRDLYYNGQPVISDAEFDALFRRLQELEEE
HPELAVPDSPTKEVGAPTAASSAFADVTHLERMYSLDNVFSAEELAEWLDKTPGPYLTEL
KIDGLSIDLVYRDGVLERAATRGDGTTGEDITANARVIEDIPHELAGDAPALLEVRGEVF
IRPEDFPELNEQRIKEGGKPFANPRNTAAGGLRQKNPDDVKKRKLHMICHGIGARDGFAP
ETQHDAYLKLAEWGLPVSEYTKRAETAKDVQDAVKYWADHRHDAIHEMDGLVIKVDSVAQ
QRQLGSTSRAPRWAIAYKYPPEEVTTTLKDIQVSVGRTGRATPYAVLEPVFVSGSTVSMA
TLHNQHEVKRKGVLIGDTVVVRKAGEIIPEVLGPVADLRDGSEREFVYPQDCPVCGTKLA
PAKEGDADWRCPNTRSCPAQLSARLEYLASRGAFDIEALGEKGAQDLIASGVLIDEAALF
DLTEEDLKKSNAYTRKDGQVNAAGKKLLANLETAKQVDFWRVLVALSIRHVGPTAARALA
ARYKSMQALLDAPLSDLAETDGVGQIIAESFKDWFTVDWHQAIVDSWTKAGVRMEDDHDA
DATPHTLEGLTVVVTGTLDGFSRDSAKEAILARGGKASGSVSKKTDYVVVGENAGSKEQK
ARDLGRPILTEEQFVSLLEEGPDALSR
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgactacacctgagccagacgtaccgtcgcccgagcgcctcgaggacctgcagcgcacg
tggagcgagatggcggacgaggtccgtcaccaccgcgacctgtactacaacgggcagccc
gtcatctccgacgcggagttcgacgccctgttccgcaggctgcaggagctcgaggaggag
caccccgagcttgccgtgccggactcgccgaccaaggaagtcggcgcgcccacggccgcg
tcctccgcgttcgcggacgtgacgcacctggagcgcatgtacagcctggacaacgtgttc
tcggccgaagagctcgctgagtggctggacaagacccccggcccgtacctcaccgagctg
aagatcgacgggctctccatcgacctggtctaccgcgacggcgtcctcgagcgcgccgcc
acccgcggcgacggcaccacgggtgaggacatcaccgccaacgcccgcgtcatcgaagac
atcccgcacgagcttgccggcgacgcccccgcgctgctggaggtccgcggcgaggtgttc
atccgccccgaggacttcccggagctcaacgagcagcgcatcaaggaaggcggcaagccc
tttgccaacccgcgcaacaccgcggccggcggcctgcgccagaaaaacccggacgatgtg
aagaagcgcaagctccacatgatctgccacggcatcggcgcccgcgacggcttcgcaccg
gagacgcagcacgatgcctacctcaagctcgcggagtggggcctgccggtctccgagtac
accaagcgggccgagacggccaaggacgtccaggacgcggtcaagtactgggcggaccac
cgccacgacgccatccacgagatggacggtctggtgatcaaggtcgatagcgtcgctcag
cagcgccagctcggctccacctcccgcgcgccgcgctgggccatcgcgtacaagtacccg
ccggaagaagtcaccaccacgctcaaggacattcaggtctccgtcggtcgcaccggccgt
gcaaccccgtacgcggtcctcgagccggtcttcgtctctgggtccacggtgtccatggcc
accctgcacaaccagcacgaggtcaagcgcaagggagtgctcatcggcgacacggtcgta
gtgcgtaaggccggcgagatcatccccgaggtgctcgggccggtcgcggatcttcgcgac
ggctcagagcgcgagtttgtctacccccaggactgcccggtatgcggcacgaaactcgcc
ccggcgaaggagggcgacgcggattggcgctgcccgaatacccgctcgtgcccggcgcag
ctgtcggcacgcctggagtacctcgcctcgcgcggcgcattcgacatcgaggcgctcggc
gagaagggcgcccaggacctcatcgcctcgggcgtgctcatcgacgaagccgcgctcttc
gacctcaccgaagaagacctgaagaagtccaacgcctacacgcgcaaggacggccaggtc
aacgccgccggcaagaaactgctggccaacctcgaaaccgccaagcaggtcgacttctgg
cgcgtgctcgtcgccctgtccatccgccacgtcgggcccaccgccgcccgcgcgctcgcc
gcccgctacaagagcatgcaagcgcttctcgacgcccccttgtccgacctcgccgaaacc
gatggcgtcgggcagatcatcgccgaatccttcaaggactggttcaccgtggactggcac
caggcgatcgtggactcctggacgaaagccggggtacgcatggaagacgaccacgacgcc
gacgccaccccgcacaccctcgagggcctcaccgtcgttgtcaccggcaccctcgatggc
tttagccgagactccgccaaggaagcgatcctggcccgcggtggcaaggcctccggctcg
gtgtccaagaagaccgactacgtcgtcgtgggggagaacgccgggtccaaggaacaaaaa
gcccgcgacctgggccgcccgatcctcaccgaggagcagtttgtctccctgctggaggaa
gggccggacgccctgtcacgctag
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