Clupea harengus (Atlantic herring): 105888485
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Entry
105888485 CDS
T09045
Symbol
cnot4a
Name
(RefSeq) CCR4-NOT transcription complex subunit 4 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105888485 (cnot4a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
char03000
]
105888485 (cnot4a)
03019 Messenger RNA biogenesis [BR:
char03019
]
105888485 (cnot4a)
04121 Ubiquitin system [BR:
char04121
]
105888485 (cnot4a)
Enzymes [BR:
char01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
105888485 (cnot4a)
Transcription factors [BR:
char03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
105888485 (cnot4a)
Messenger RNA biogenesis [BR:
char03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105888485 (cnot4a)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
105888485 (cnot4a)
Ubiquitin system [BR:
char04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
105888485 (cnot4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-C3HC4_3
zf-UDP
zf-C3HC4_2
zf-RING_2
Nup35_RRM_2
Rtf2
DZR_2
RDD1
zf-C3HC4
zf-CCCH_2
Torus
Motif
Other DBs
NCBI-GeneID:
105888485
NCBI-ProteinID:
XP_031420874
Ensembl:
ENSCHAG00000002097
UniProt:
A0A6P8F739
LinkDB
All DBs
Position
3:22803396..22817579
Genome browser
AA seq
834 aa
AA seq
DB search
MSRSPDVKEDPMECPLCMEPLEIDDVNFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
PEDPAVYKPLSQEEIQRIKNEKKQKQNEKKQKVTENRKHLASVRVVQRNLVFVVGLSQRL
ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYLRSEDALRAIQCVNNVV
VDGRTLKASLGTTKYCSYFLKSMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
LQDLYKMNPTFLQPSACGNEKSKGKSSTSQRPGSTNKDGWPLLQGCGKVVNGLPTENRKT
PPVLDCGSDSDHMTPDGQDSEELCPDQGTDISPFPSALDPSRVFNGFSPSCCSPIDNPPE
SNSITENGETISQFPQLPNSDSPSPPPGLTRPSLLVPISVSDLTARSPFEGAAAESRSLF
SDNSNFRHPNPLPSSLPSGPCSPQGGSDWPMTPEPQSLFTSDTIPVSSSTDWQAAFGFGS
SSTQQQQQDDDLGFDPFDVTRKALADLIEKELSVQEPPSSSALSPDPFHNHAHAHLYRSS
LAQRFGHLHQRAPVNGHLGPMPNQTTSRHPWMGTSTRNNLVHLNHTAVHSSFLDLNLPVQ
EQHPPHSTGLGGIPISAENNGSIESLNVKEWQDGLRALLPNININFGGLPSSTSSSSSSS
SSSSVNHIGGPGGSLGGVSHSLSWDATASWMDPAIITAPGPPENPQTPQYLHQYLLNGIP
SSAGNSLDCLQDDNPPHWLKSLQALTEMDAPASTAAPPQQQQQQQQQQPQHHTGMLDMHL
SSLHRAGWAPYLPPPSTATPSHFHSPPPGFQTAFRPPAQTATADLLQNAAMDRH
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgcagcccagatgtcaaggaggacccaatggagtgcccactgtgcatggagccc
ttggagatcgatgacgtcaactttttcccttgcacctgcggctaccagatctgccgcttc
tgctggcaccgcatccgcacagatgagaatggcctctgtcccgcctgcagaaagccctat
ccagaggacccggctgtttacaagcccctctcacaggaagagatccagaggataaagaac
gagaagaagcagaagcagaacgagaagaagcagaaggtcacagagaaccgcaagcacctg
gccagcgtgcgcgtggtccagcggaatcttgtgtttgttgtcggactgtctcaaaggctc
gcagatcctgaggttcttaaaagaccagagtactttggaaagtttggaaaaatccataag
gtggtcatcaataacagcacatcatatgcaggttcacagggtccaagtgccagtgcatac
gtcacatacctccgctcagaggatgccctgagagcaatccagtgtgttaataatgtcgtt
gtggatggtaggactctaaaggcttccttaggtacaacgaaatactgcagttattttctc
aaaagtatgcagtgtcccaagccagactgcatgtatttacatgaactgggagatgaagcg
gctagttttacaaaagaagagatgcaggcaggaaagcatcaagaatacgaacaaaaacta
ctccaggatctatacaaaatgaatcctactttcctacaaccttcagcatgtggcaatgag
aaatcaaaaggaaaatccagcacctcccaaagacctggcagcaccaacaaagatggctgg
cctttgctacaaggatgtggcaaggtagtcaatggtctacccacagaaaaccgtaaaacg
cctccagtcttagactgtggctcagactcggatcacatgacgccagatgggcaagactct
gaagagctttgccctgatcagggcaccgacatctcgcctttcccatcagcattagacccc
tcaagagtttttaatggattttccccttcctgttgcagtcccattgataatcctccagaa
tcaaacagtatcacagagaatggggagactatatcacagtttcctcagctcccaaacagt
gattccccctcccctcctcctggcctcaccaggcccagtctactggtccccatcagtgta
tcagacctcacggcccgctcacccttcgagggggcggccgccgagtctcgctctctcttc
tcggacaacagcaacttccggcaccccaacccgctccccagcagcctgccctccggcccc
tgctcccctcagggagggtcagattggcccatgacccccgaaccacagagccttttcacc
tcagacaccatccctgtgtcatcgtcaacagactggcaggcggctttcggcttcggttcc
tcatccacgcagcagcagcagcaggacgacgatttgggcttcgaccccttcgacgtcaca
cgcaaggccctggctgacctcatcgagaaggagctgtcagtacaggagcccccctcctcc
tccgctctctcccccgacccgttccataaccacgcacatgcccacctgtaccgctccagt
ttggcacagcgcttcggccacctgcaccagcgcgccccggtcaacggccaccttggcccc
atgcccaaccagaccacttcccgccacccatggatgggtacttccacacgcaataacctg
gtacacttgaaccacacagctgtgcacagcagcttcttggacttgaatttgccagtgcag
gagcagcatcccccccacagtactggccttggaggcatccccatatcagcagaaaacaac
ggctctatagagagcctcaacgtcaaagagtggcaggacgggttgcgagcactcctacca
aatatcaacatcaacttcgggggtctccccagctctacctcctcttcgtcctcatcctca
tcctcctccagcgtcaaccacatcggggggcccggcggctccttggggggggtctcgcac
agcctcagctgggacgccacagccagctggatggacccagccatcatcacagccccaggt
cctcctgaaaaccctcagacacctcagtatctgcaccagtatcttttaaatggtatccca
tcatccgccggcaacagtctggactgtctccaggacgacaatccgccgcattggcttaag
tccttgcaggcgctcacagagatggacgccccggccagcacagcggctcccccgcagcag
cagcagcagcagcagcagcagcagccgcagcaccacaccgggatgctggacatgcacctc
tcctccctgcacagagccggctgggcgccctatctccccccaccctccactgccacgccc
agccacttccactcgcctcccccaggcttccagaccgccttcagaccccctgcccagaca
gccacagcagacctgctacagaacgccgccatggatcgccactag
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