KEGG   Clupea harengus (Atlantic herring): 105888564
Entry
105888564         CDS       T09045                                 
Symbol
smfn
Name
(RefSeq) small fragment nuclease
  KO
K13288  oligoribonuclease [EC:3.1.-.-]
Organism
char  Clupea harengus (Atlantic herring)
Pathway
char03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:char00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    105888564 (smfn)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:char03019]
    105888564 (smfn)
   03009 Ribosome biogenesis [BR:char03009]
    105888564 (smfn)
Messenger RNA biogenesis [BR:char03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     105888564 (smfn)
Ribosome biogenesis [BR:char03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    105888564 (smfn)
SSDB
Motif
Pfam: RNase_T Rv2179c-like DUF1091
Other DBs
NCBI-GeneID: 105888564
NCBI-ProteinID: XP_012669755
Ensembl: ENSCHAG00000019135
UniProt: A0A6P3VE29
LinkDB
Position
16:complement(24719883..24724715)
AA seq 266 aa
MILKQMFRGVSACSTGLAILCRVVKPSSARRSICATSVNFHTDQYRLASSAFSTRLLSKP
LATTIAVFKGNMDSCHLSDSASADSRQRIVWVDLEMTGLDIEKDEIIEMACIITDSELNI
LAEGPNLIINQPDELLDGMSEWCQTHHGSSGLTQAVRDSKISLQDAEKEFLSFIKKYTPP
HQCPLAGNSVHADKKFLDKYMPQFMSQLHYRIIDVSTVKELCRRWYPAEYKKAPSKKGSH
RALDDIRESISELKFYRKAIFKTPHH
NT seq 801 nt   +upstreamnt  +downstreamnt
atgatcctaaagcagatgttccgtggagtatccgcatgttcgacaggacttgcaatttta
tgccgggtggtcaaaccttcgtctgcacggaggagcatatgtgctacttcagtaaacttc
cacacggaccaataccgactagctagctctgcgtttagcaccagacttctgtctaaacct
ttggcgactactatagcggtgttcaaagggaacatggattcatgtcacctttccgactct
gcctccgcagactcgagacagagaatagtttgggtcgacctagagatgacgggactagac
atagaaaaagatgagatcattgaaatggcttgcatcatcacagactctgaactgaacatc
ctggcagagggaccaaatctgatcataaaccaaccggatgagctcctagatggaatgtcc
gagtggtgccagacacaccatggcagttcaggcctgacacaagcagttcgggacagtaag
atttctcttcaggatgcagagaaggaattcctgtccttcatcaaaaagtacacccctcct
catcaatgtccgcttgcaggaaattcagtccacgctgacaaaaagtttctggacaaatat
atgccccagttcatgagccaactccactaccgcatcatcgatgtcagcacggtcaaagag
ctgtgcagacggtggtatcctgcggagtacaaaaaagccccttcaaaaaaaggatctcat
agggcactggatgacattcgggagagcatcagtgaactgaagttttatagaaaagccatt
ttcaaaacaccgcatcactga

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