Clupea harengus (Atlantic herring): 105888620
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Entry
105888620 CDS
T09045
Symbol
polr2b
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03020
RNA polymerase
char03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
105888620 (polr2b)
09124 Replication and repair
03420 Nucleotide excision repair
105888620 (polr2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
char03021
]
105888620 (polr2b)
03400 DNA repair and recombination proteins [BR:
char03400
]
105888620 (polr2b)
Enzymes [BR:
char01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
105888620 (polr2b)
Transcription machinery [BR:
char03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
105888620 (polr2b)
DNA repair and recombination proteins [BR:
char03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
105888620 (polr2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
105888620
NCBI-ProteinID:
XP_012669813
Ensembl:
ENSCHAG00000023111
UniProt:
A0A6P3VF10
LinkDB
All DBs
Position
6:11418560..11430538
Genome browser
AA seq
1174 aa
AA seq
DB search
MYDQDEDIQYDEDEDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHTSGEIEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTIIKEGEDQLLTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTAECRSCLENSSRPTSTIWVSMM
ARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKERRIKYAKEVLQKEVLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLS
HLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYSHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPSRETCQGM
RHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPEVDEELESTTRRYVKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQKVSNLLSEYGY
HLRGNEVLYNGFTGRKVTSQVFIGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGLMAIANTRTHTYECRGC
RNKTQISLVRMPYACKLLFQELMSMSISPRMMVS
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtatgatcaagatgaagatatccagtacgatgaggatgaggatgagatcaccccggac
ctgtggcaggaagcctgttggatcgtcatcagctcgtactttgatgagaagggtctggtg
cggcagcagctggactcctttgatgagttcatccagatgtccgtacagaggatcgtagag
gacgctccacccatagacctgcaggcagaggcgcagcacacgtcaggagagatagaggaa
ccgccgaggtacctgttgaagtttgaacagatctacctgtccaagcccacgcactgggag
cgagatggagcgccctcgccaatgatgcccaacgaggcccgactgcgcaacctcacgtat
tcggcccctctctatgtggacatcactaagaccatcattaaggagggtgaggatcagctg
ctgactcaacatcagaagaccttcattggaaaaattcccatcatgctccgctccacctac
tgcctactgagcggcctgacggaccgtgacttgtgtgagctcaacgagtgcccccttgac
cctggcggctactttatcatcaacggctccgagaaggtgctgatcgctcaggagaagatg
gccactaacacagtctacgtgttcgctaagaaggactctaagtacgcttacactgcagaa
tgtaggtcctgtctggagaactcctcacgacccaccagcaccatatgggtcagcatgatg
gccagaggaggacagggtgtgaagaagagtgctatcggccagcgaatcgtctccactctg
ccgtacattcggcaggaagtgcctatcattatcgtgttccgtgcgttgggcttcgtgtcc
gaccgggacatcctggagcacatcatctacgacttcgacgaccctgagatgatggagatg
gtgaaaccgtccctggatgaggcgtttgtgatccaggagcagaacgtggcgctgaacttc
atcgggtcccgtggtgccaagccaggcgtcaccaaggagaggagaatcaagtacgccaaa
gaggtgctgcaaaaagaggtgctgccgcatgtgggagtcagcgacttctgcgagaccaag
aaggcctacttcctggggtacatggttcacagactgctgttggctgcgttgggcagacgc
gagcttgatgacagagatcactatggcaacaagagactggacttggctggacccctgttg
gcattccttttcagagggatgtttaagaacctgctgaaggagatccgtatctatgcgcag
aagttcatcgaccgcgggaaagacttcaacctggagctggcgatcaagaccaggatcatc
tccgacggactcaagtactccctcgccactggcaactggggggacgtcaagaaagcccat
caggccagggcaggggtgtctcaggtgttgaatcgcttgacctttgcatcgaccttgtct
catttgaggcgtgtgaactcccccatcggcagagacggaaagctggccaaacctagacag
ctccacaacacgctgtggggcatggtgtgtcctgctgagactccagagggccatgctgta
gggctggtgaagaacctggccttgatggcctacatctctgtgggctcccagccctcccct
atcctggagtttctggaagagtggagtatggagaacctggaggagatctcaccagccgcc
attgcggatgccactaagatctttgtgaacggctgctgggtggggatacacaaggacccg
gagcagctgatgaacacactacgcaaactccgacgccagatggacatcatcgtgtcagag
gtgtccatgatcagagacatccgtgaacgggagatcaggatctacacggacgctgggagg
atctgtcgccccctactgatcgttgagaaacagaagcttttactcaagagacgccacatc
gaccagctcaaggagagagaatacaacaactacagctggcaggacctggttgcgagtgga
gtggttgagtacattgacacactggaggaggagacggtgatgttggccatgacccctgat
gaccttcaggaaaagggtgtggcctactgctccacatactcacattgcgagatccacccc
tccatgatcctgggagtttgtgcgtctatcatccccttccctgatcacaaccagtctccc
aggaacacgtaccagtctgctatggggaagcaggctatgggtgtgtacatcactaacttc
cacgtgcgcatggacacactcgctcatgtcctctactacccccagaagcccctagtcacc
acaaggtctatggagtacctgcgtttcagagagctgcctgcaggcattaactccattgtt
gccatcgcctcatacacgggatacaaccaggaggattctgtcatcatgaaccgctctgct
gtagaccgcggattcttccggtctgtgttctaccggtcctataaggagcaggagtctaag
aagggctttgaccaagaggagatctttgagaaacccagcagagaaacatgccagggcatg
cgtcatgccatctatgacaagctggacgacgacgggctgattgcgccgggcgtgcgcgtg
tccggcgaggacgtgatcatcggcaagactgtgactctgccagaggtggacgaggagttg
gagagcactacccgccgctacgtcaagcgagactgcagcaccttcctccgcaccagcgag
acgggcatcgttgaccaggtcatggtcacactcaaccaggaggggtacaaattctgcaag
atcagggtgcgttctgtgaggatccctcagattggggataagtttgccagtcgacacgga
caaaagggaacctgtggtatccagtacagacaggaggatatgccgtttacctgtgagggc
atcactcctgacatcatcatcaatcctcacgccatcccctccagaatgacagtcggccat
ttgatcgagtgtttacagggaaaggtctcggccaataagggagagatcggtgatgccact
ccctttaacgatgcggtcaatgtgcagaaggtgtccaaccttctgtctgagtacggatat
cacctgagaggcaacgaggtgctgtataacggcttcactggcaggaaggtgacgtctcag
gtctttatcgggccaacatactaccagcgtctcaaacacatggtagacgacaagatccac
tcccgcgctcgcggccccgtacagatcctcaacagacagcccatggagggcaggtcacgt
gacggtggactgcgtttcggtgagatggagcgtgattgtcagattgctcacggggccgcc
cagttcctgcgggagcgtctgttcgaggcatcggacccgtaccaggtgcacgtgtgcaac
ctgtgcggactcatggccatcgccaacacacgcacacacacctacgagtgtcgtggctgc
cgcaacaaaacacagatttcgctggtgcggatgccgtatgcctgtaagctgctgttccag
gagctcatgtccatgagcatatccccacgcatgatggtcagctag
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integrated database retrieval system
