Clupea harengus (Atlantic herring): 105888624
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Entry
105888624 CDS
T09045
Symbol
abca1b
Name
(RefSeq) phospholipid-transporting ATPase ABCA1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char02010
ABC transporters
char04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
char00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
105888624 (abca1b)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
105888624 (abca1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
char02000
]
105888624 (abca1b)
Transporters [BR:
char02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
105888624 (abca1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
AAA_22
Motif
Other DBs
NCBI-GeneID:
105888624
NCBI-ProteinID:
XP_031424849
Ensembl:
ENSCHAG00000022661
UniProt:
A0A6P8FGH3
LinkDB
All DBs
Position
6:11319819..11358797
Genome browser
AA seq
2287 aa
AA seq
DB search
MSIATQLGLLLWKNFTYRRRQTLQLLVEIVWPLFIFFILIAVRINYPPYEQHECHFPNKA
MPSAGTLPWLQGIVCNANNPCFRHPTPGESPGVVGNFNDSIISRLFTDAKKILLYSQNDR
SLDGFKQLFHAFKTLQNNSEAFRLKDFLRDDENLSTFLLRNASLPEDAVKEIVEAEVNLE
KVLVKGLGVHLRDMCNSSALEEFVRISNRSVSHHVQQTLCSSPKTWLNQAEDLFLDNLDF
LKAMRSDIRADPKDLKEVGKATDKLLESLGALAVELASMRSWSDLRNEILFLTHNATGSP
AQMYQAMSRIVCGHPEGGGLKIKSLNWYEDSNFQALFGNHGNSSEDEPLMTYDNTSTPYC
NSLMRNMEASPISRMMWQALKPLLMGKILYTPDNPATQTIIKEVNRTFQEMGVLRDLGGM
WVEMRPKMWNFLEDSKEVNLLRSLLKNNASALFLSHQLAGTRWSVEDISSFLSKHSEDHR
PQGLSLTWRDIFNETDQAIASISRFMECVNLDKLEPVASEEKMVHESMVLLENRKFWAGL
VFPDIPANSTELPPHVHFKIRMDIDNVERTNKIKDAYWDPGPRADPFEDLRYVWGGFSYL
QDIVEHSIIRAVTGVTEKTGVYIQQMPYPCYVDDIFLRVMSRSMPLFMTLAWMYSVAVII
KGVVYEKEARLKETMRIMGLDNGILWFSWFISSLIPLLISALLLVILLKTGNLLPYSDPG
VVFLFLGSFAVVTIMQCFLISTIFARANLAAACGGIIYFTLYLPYVLCIAWEEYVGFSTK
VVVSLLSPVAFGFGCEYFALFEEQGVGIQWSNLLSSPHHEDDYSLTTSLLIMYFDAALYG
LLTWYIEAVFPGQYGIPRRWYFPFTRSYWCGEGQGARGGATPQTRSGNAAAVCMEEEPVH
LPLGVYIENLVKVYRHGKKLAVDGLSLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTS
GTAHILGKDIRTELSAIRQSLGVCPQHNVLFSMLTVEEHIWFYARLKGLSEESVKTEMEQ
ILTDTGLPHKRTSRSCTLSGGMQRKLSVALAFVGGSQVVILDEPTAGVDPYARRGIWDLL
LKYRAGRTIILSTHHMDEADILGDRIAIISHGRLCCVGSSLFLKTHLGSGYYLTLVKKDP
EPSLSSCRNSASTVSFSKKEDDGSDSSSDAGLGSDQESEAATAIVDSVVPPADVSLISGV
ILKHVPGARLVEDLGHEITFVLPYKSAKDGAFVELFHEMDDRLSDLGISSYGVSDTTLEE
IFLKVAEDSGVDTEIISDGTLPVRRRRRHAFGGDHQSCLKPHTEDDQNENDSEADPESRE
TDWLSGADGKGSYQVKGWSLRKQQFVALLWKRFLFARRSRKGFFAQIVLPAVFVCIALVF
SLIVPPFGKYPSLALQPWMYEEQFTFFSNDAPEDASTQRLLAALVDGPGFGTRCMENQPI
PDVLCTMGDEDWMVPEVPESVLELFTSQNWTMDDPSPACECSCNGNKKMLPECPVGAGGL
PPPQIKISALDTLQNVTGRNISDYLVKTYAQIIAQSLNNKIWVNEFRYGGFSLGARSTQV
LPPAAEIDDAISRVREIFHLEKGSKTAADRFLHSLSGFINGLDTKNNVKVWFNNKGWHSM
GAFLNVMNNGILRANLPAGKHPGKFGITVHNHPLNLTKEQVSQVALVTTSVDVLVSICVI
FAMSFVPASFVVFLIQERVSKAKHMQFISGVQPLLYWTATFIWDMCNYVVPATLVVIIFI
CFQQEAYVSSTNLPVLILLLFLYGWSITPLMYPASFFFKIPSTAYVVLTSVNILIGINGS
ISTFVLELFGNNEQGGINDILKNVFLIFPHFCLGRGLIDMVKNQAMSDALERFGENRFRS
PLHWDMVGKNLFAMAVEGAVFFIITVLIQYRFFFKPSSLSVKLKPVGEEDEDVARERHRI
VSGAGKGDILELRQLTKVYKKKQKPAVDRLCVGIPPGECFGLLGVNGAGKTSTFKMLTGD
SPVTSGEAFLAGKSILREIDEVHQNMGYCPQFDAIHDLLTGREHLEFYAILRGVPEDEVC
DVAEWGIRKLGLMRYVDKAAGSYSGGNMRKLSTAMALIGGPPVVFLDEPTTGMDPKARRA
LWDCIHGIIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIV
LRVGGPEPDLGPVLAFINAEFPGSLLKEKHRNMLQYQLPSALSSLTWIFSTLAKHKQRLC
IEDYSVSQTTLDQVFVNFAKDQSDDPLEHSKDLSVRRKEAVMGMSLLNPAHRPSPKTPSK
EVNDSLV
NT seq
6864 nt
NT seq
+upstream
nt +downstream
nt
atgtccatcgccacacagctgggactcctgttgtggaagaacttcacctacaggaggagg
caaacgcttcagcttctggttgagatcgtctggcctctcttcatcttcttcatcctcatc
gctgtgagaatcaactacccaccttatgagcaacatgaatgtcacttcccaaacaaggct
atgccctcggcgggcacgttgccatggctacagggcattgtctgcaatgccaacaacccc
tgcttcaggcacccaacaccgggagaatcaccgggggtcgtcggcaacttcaatgattcc
ataatatctcgtttgtttaccgacgctaagaagatcctgctgtacagtcagaacgatcgc
agtctggacggcttcaagcagctgttccacgcttttaagaccctgcagaacaactctgaa
gctttccggttgaaagacttcctacgtgatgatgaaaatctgtcgacattcctgctacga
aatgcatcacttcctgaagatgctgtcaaggagattgttgaggccgaagtcaacctggaa
aaggtgttggttaaaggcttgggtgtacacctgagggacatgtgtaacagctcggcgctg
gaggagtttgtgcgcatctcaaaccggagtgtgtcccaccacgtgcagcagactctgtgc
tccagtccaaagacttggctcaaccaggccgaggatctcttcctcgacaatctggacttc
ctcaaggccatgaggtctgatataagggctgaccctaaagatctcaaagaagttggcaag
gcaacggataagctccttgagagtctgggggcactggcagtagagctggccagcatgcgg
agctggagcgatctgcggaatgagatcctgttcctcacccacaacgccacgggctcgccg
gcgcagatgtaccaggccatgtcccgcatcgtgtgtggacacccggaggggggcggcctc
aagatcaaatctctcaactggtacgaggacagcaacttccaggccctgttcggtaaccac
ggcaacagcagtgaggatgagcccctgatgacctatgacaacacttccaccccctactgt
aacagcctgatgaggaacatggaggcgagccccatctcgcggatgatgtggcaggcgctc
aagcctctgctcatgggcaagatcctctacactcctgacaaccccgccacacagaccatc
atcaaggaggtgaaccgtacctttcaggagatgggcgttctgcgggacctgggtgggatg
tgggtagagatgagacccaagatgtggaacttcttggaggacagcaaggaggtcaacctg
ctcagatccctgctaaagaacaacgcgtcagcattgttcttaagccaccagctggctggg
actcggtggagtgttgaggacatctccagcttcctgtccaaacattccgaagaccaccgc
ccacagggtttgtctctcacctggagggacatcttcaacgagactgaccaggccatcgcc
agcatttcacgcttcatggagtgtgtgaatctggataagctggagcctgtggcctcggag
gagaagatggtccatgagtccatggtgcttctggagaacaggaagttctgggcggggctt
gtgtttcccgacattccagccaatagcactgagcttccgccccacgtccacttcaagata
cgcatggacatcgacaacgtagagcgcaccaacaagatcaaagacgcgtactgggaccct
ggtccccgtgcggacccgtttgaagacctgcgctacgtgtggggaggattttcctacctg
caggacatcgtagaacacagcatcatcagggctgttaccggggtcaccgagaagactggc
gtatacatccagcagatgccttatccctgctacgttgatgatatcttcctgcgtgtaatg
agtcgctcgatgcctctcttcatgaccctggcctggatgtactccgtggccgtcatcatc
aagggcgtggtctacgagaaggaggcgcggcttaaggagaccatgaggatcatgggattg
gacaacggcatcctgtggttcagctggtttatcagcagtctgataccgctgctcatcagt
gccctcctactggtgatactgcttaagacgggtaatctcctgccctacagtgacccagga
gtggtcttcctgttcctgggttccttcgccgtggtaaccatcatgcagtgtttcctcatc
agcaccatattcgcccgcgccaacctggccgctgcttgtggagggatcatctacttcaca
ctctacctgccctacgtgctgtgtatcgcctgggaggagtacgtgggcttctccaccaaa
gtcgtcgtgagcctgctgtccccggtggcctttggcttcggctgcgagtacttcgcccta
tttgaggagcagggtgtggggatccagtggagcaacctgctgtccagcccccaccacgag
gacgactacagcctgaccacctccctgctcatcatgtacttcgacgccgccctctacggc
ctgctcacctggtacatcgaggccgtcttccctggccagtatggcatcccgcgccgctgg
tacttccccttcacccgctcgtactggtgcggggagggccaaggggccagaggtggcgcc
accccgcagactcggagtggaaacgcagctgcagtgtgtatggaggaggaaccggtacac
ctgcctctgggcgtgtacattgagaacctggtaaaggtgtaccgtcatgggaagaagctg
gcggtggacggcctctcactgggcttctacgagggacagatcacctccttcctgggccac
aacggcgccggcaaaaccaccaccatgtccatcctgacaggcctgttcccgcccacctct
ggcaccgcccacatcttgggcaaagacatccgcaccgaactgagcgccatccgtcagagc
cttggagtgtgtccccaacacaacgtcctcttcagcatgctgacagtagaagaacacatc
tggttctatgcgcgactgaagggtctatcagaggagtctgtgaagacagagatggagcag
atactgactgacaccggcctaccacacaaacgcacctcacgcagttgcacgctctcaggt
ggtatgcagaggaagctgtcggtggctctggcgtttgtgggcgggtctcaggtagtgatt
ctagatgagcccacggcaggagtcgacccctacgcacgacgcggcatctgggacctactg
ctcaaataccgtgccggtcgcaccatcattctgtccacccaccacatggacgaggctgac
atcctgggcgaccgcatcgccatcatctcgcacggccgcctctgctgcgtgggatcctcc
ctcttcctcaagacgcatctgggcagtggctactacctcacgctggtcaagaaggacccg
gaaccttccctcagctcctgcaggaactcagccagcactgtgtcctttagcaagaaggag
gatgatggctctgacagtagttctgatgcgggtctcggcagtgatcaggagagtgaagca
gctacagccatcgtggactcagtggtgccccctgcagacgtgtctctgatcagcggtgtg
attctgaagcacgttcctggcgctcggctggtggaggaccttggtcatgagatcaccttt
gtgctgccctacaagtcggccaaagacggtgccttcgtggagctcttccatgagatggac
gatcgcctcagtgacctcggaatctcaagctacggcgtgtctgacactactcttgaagag
atcttcctgaaggttgcagaggacagtggagtcgacactgaaatcatctcagatggaact
cttccggtgcgtaggcgacgtagacacgcatttggaggtgaccaccagagctgcctgaag
ccccacactgaagacgaccagaatgaaaatgactcagaggctgacccagaatctcgtgag
acggactggctcagtggtgcggatggaaaaggctcctatcaggtgaaggggtggagccta
cggaagcagcagtttgtggcgttgctatggaaacgattcctttttgcccgccgctccagg
aagggtttctttgctcagattgtgttgcctgctgtgtttgtgtgtatcgctctggtgttc
agtctcatcgttcctccgtttgggaaataccccagcctcgcgctgcagccatggatgtat
gaggaacagttcaccttctttagtaatgacgcccctgaagacgccagcactcagagactc
ctggctgctctagtggatggaccgggcttcggaacacgctgcatggagaaccagccaatc
ccggatgtgctgtgcaccatgggtgatgaggattggatggtgcctgaggttccagagagt
gttctagaactgttcacctcacagaactggaccatggacgatccatcccctgcgtgtgag
tgcagttgtaatggcaacaagaagatgctcccagaatgccccgtgggggcgggtgggctg
ccgccaccacagataaagataagcgccctggacactcttcagaatgtgacaggcaggaac
atctcagactacctggtgaaaacatacgcccagatcatcgcccaaagtttgaacaacaag
atctgggtgaacgaattcagatacggaggcttctcattgggtgcccgaagcactcaggtc
ctgccccctgcagcagagattgatgatgcgattagccgcgtgcgggagatcttccacctg
gagaagggctccaaaaccgcagcagaccgcttcctgcacagtctctcagggttcatcaac
ggcctcgacacaaagaacaatgtcaaggtgtggtttaataataaaggttggcacagcatg
ggtgcgttcctgaacgtgatgaataacggcatcctgcgggccaatcttcctgcgggcaaa
catcccggcaagtttggcatcaccgtacacaaccaccccctcaacctgaccaaggagcag
gtctcccaagtagccctggtgaccacctccgtggatgtgctggtgtccatctgtgtgatc
ttcgccatgtcctttgtaccggcgagctttgtagtcttcctcatccaagagcgtgtcagc
aaagccaaacacatgcagttcatcagcggcgtgcagcccctactttactggaccgccacc
ttcatctgggatatgtgtaactacgtggtgccggcgacccttgtcgtcatcatcttcatc
tgcttccaacaagaggcgtacgtctcctccaccaacctgcccgtgctgatcctcctgctc
ttcttatacgggtggtccatcactcccctgatgtacccggcatccttcttctttaagatt
cccagcacggcctacgtggttctgaccagcgtcaacatcctcattggcatcaacggcagc
atctccacattcgtcctcgagctgttcggcaacaatgagcaaggtgggatcaatgatatc
ctgaaaaacgttttcctcattttccctcacttctgtttggggcggggcctcattgacatg
gtgaagaaccaggccatgtccgatgctctcgaacgcttcggagaaaaccggttccgctcg
ccactgcactgggacatggtgggcaagaacctcttcgccatggcagtggagggtgcggtg
ttcttcatcatcaccgtcctcatccaataccgtttcttcttcaagcccagctctctgagt
gtgaagctgaagcctgtaggggaggaggatgaggatgtggcgagggaacggcatcggatc
gtcagtggagcaggaaaaggagacatcctggagttgagacaactcaccaaggtatataag
aagaagcagaagccagctgtggatcgtttgtgtgtgggcatcccccctggagagtgtttt
ggtctactaggagtaaatggggctgggaagaccagtacatttaagatgctaacaggagac
tcaccagttaccagtggagaggccttcctagcaggaaagagtatcctacgtgagattgat
gaggtacatcagaacatgggttactgccctcaatttgacgccatccatgatctcctgacg
ggcagagaacacctggagttctacgccatcctcagaggggtgcctgaggacgaagtctgt
gatgtggcagagtggggcatccgtaagctgggtctgatgaggtatgtggataaagcagca
ggcagctacagtggaggcaacatgaggaagctctctactgccatggctctgataggagga
ccccctgtagtgtttctggatgagcccacaacaggaatggaccccaaagcccgcagagca
ctgtgggactgcatccacggcatcatcaaagagggacgatcagtagtgctcacctcacac
agcatggaggagtgtgaggctttgtgtacacgcatggccatcatggtgaacggccggttc
cgttgcctgggcagcgtccagcacctgaagaaccgctttggcgacggctacaccatcgtt
ctgcgcgtgggcgggccggaaccagacctaggccccgtgctggccttcataaatgcggag
tttcccgggtctctgctgaaggagaagcaccggaacatgctgcagtaccaactgccctct
gccctcagctctctaacctggatcttcagcaccctggccaaacacaagcagcgcctctgc
atagaggactactctgtctcccagactacactagaccaggtgtttgtaaactttgctaag
gaccagagtgatgacccgttggaacacagcaaggacctatcagtgcgtcgcaaagaggcc
gtgatgggcatgtccctcttaaaccccgcccacagaccctcccccaaaacaccttccaag
gaggtcaacgatagccttgtgtga
DBGET
integrated database retrieval system
