KEGG   Clupea harengus (Atlantic herring): 105888627
Entry
105888627         CDS       T09045                                 
Symbol
exosc3
Name
(RefSeq) exosome complex component RRP40
  KO
K03681  exosome complex component RRP40
Organism
char  Clupea harengus (Atlantic herring)
Pathway
char03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:char00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    105888627 (exosc3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:char03019]
    105888627 (exosc3)
Messenger RNA biogenesis [BR:char03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     105888627 (exosc3)
SSDB
Motif
Pfam: RRP40_S1 KH_6 RRP40_N_mamm Rrp40_N RRP4_S1 DUF7645
Other DBs
NCBI-GeneID: 105888627
NCBI-ProteinID: XP_012669820
Ensembl: ENSCHAG00000023078
UniProt: A0A6P3VEG8
LinkDB
Position
6:11370495..11372683
AA seq 241 aa
MFNSFKEKISEVLLPGDVFTFDLPDLASNVKPEKVICGPGLRRDGDDVRVCKCGILRHKP
PNVFWIDSQQKRYVPVKGETVIGVVTAKSGDIFKVDVGGSELASLSYLAFEGATKRNRPN
VQVGDLVFAQFIIANKDMEPELVCIDSCGRANGMGVFGEGGFLFRVSLGLVRRLLAPQSE
IVADLSGLFPCELVVGLNGRVWVKAKSTQQTLILANLLESCENMTSNQRQALFKRVADGA
L
NT seq 726 nt   +upstreamnt  +downstreamnt
atgtttaacagttttaaagagaaaattagtgaggttttattacctggagatgtctttaca
tttgacctgcctgacttggcgtccaatgtgaagcccgagaaggtgatttgtggcccagga
ttgcggcgggacggagatgatgtacgcgtgtgtaagtgtggcattctacggcacaaacct
ccaaatgtgttctggatagactcgcaacagaaacggtatgtgccggtgaaaggtgagacg
gtgattggcgttgtgacggccaaatcaggagacatatttaaggtggacgtgggtgggagc
gagcttgcctccctatcctacctcgctttcgagggagccaccaagcggaaccgacccaac
gtacaggtgggggacctggtgtttgcccagttcatcattgctaataaggacatggagcct
gagctggtgtgcatcgacagctgtggtcgtgccaacggaatgggggtgtttggagagggg
gggttcctctttcgcgtgtcactgggtctcgtgcgtaggttgctggcccctcagagtgag
atcgtggcagacctgtctggtctgtttccgtgtgagctggtggtcgggttgaacgggcgt
gtgtgggtgaaggccaagagcacccagcagaccctcatcctcgccaacctgctggagagc
tgtgagaacatgacatccaatcagagacaagctctcttcaagagggtggcagatggagcg
ctctag

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