Clupea harengus (Atlantic herring): 105888632
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Entry
105888632 CDS
T09045
Name
(RefSeq) nuclear cap-binding protein subunit 1
KO
K12882
nuclear cap-binding protein subunit 1
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03013
Nucleocytoplasmic transport
char03015
mRNA surveillance pathway
char03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105888632
09122 Translation
03013 Nucleocytoplasmic transport
105888632
03015 mRNA surveillance pathway
105888632
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
char03019
]
105888632
03041 Spliceosome [BR:
char03041
]
105888632
Messenger RNA biogenesis [BR:
char03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
105888632
Spliceosome [BR:
char03041
]
Common components
Common spliceosomal components
Cap binding complex
105888632
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G_like_2
MIF4G_like
MIF4G
DUF1690
Vfa1
AAA_11
PCRF
Exonuc_VII_L
EMC3_TMCO1
Motif
Other DBs
NCBI-GeneID:
105888632
NCBI-ProteinID:
XP_031424853
Ensembl:
ENSCHAG00000023184
UniProt:
A0A6P8F8K6
LinkDB
All DBs
Position
6:11447145..11458818
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AA seq
795 aa
AA seq
DB search
MSRRRHSDENDGAQPHKRRRTSEPIEIEDRLESLICRVGEKSTSSLESNLEGLAGVLEAD
LPNYKSKILRILCSVARLLPEKLTVYTTLVGLLNARNYNFGGEMVEAMIRTLKETLKANL
FDEAAYLVRFLSDLVNCHVIAAPSMVAMFENFVAVIQEEEIPQVRSDWFVYAVLSSLPWV
GKELYEKKDVEMDRLLNQIEAYLNGRQKTHVPMLQVWSADKPHPQEEYLDCLWAQVQKLK
KDRWQERHIMRPYVAFDSVLCEALQHNLPPFTPPAHTSDACYPMPRVVFRMFDYTDAPEG
PVMPGSHSVERFVIEENLHCIIKSHWRERKTSAAQLLSYPGKNKIPLNYHIVEVIFGELF
QLPLPPHIEVMYTSLLIELCKLQPGSLPQVLAQATEMLYMRLDTMHTTCIDRLINWFAHH
LSNFQFRWSWDDWADCLTVDIDKPKPKFVKEVLEKCMRLSYHQRIVDIVPPSFSALIPAD
PLFQYKYGEDTSSSLPGYPVSITVGNAIKNRASNDEIITVLKDVPNPNQEDDDDEGESFN
PLKIEVFLQTLLHLAAKSFSHSFSALAKFHEVLKAISDCDEGKLHVLKVVYQVWKNHPQM
IAVLVDKMVRTQIVDCAAVANWVFSQDMAHDFTRFYMWEILHSTMRKMNKHVQKVQKELE
EAKDKLEKQQHKKKDSGDEEEMDKLSGDEDMQLEEQIERLQEKVESAQSEQKNLFLVIFQ
RFIMMLTEHLVRCETGGIDFNTSWYKICIERLQQVFLMHHSTIQQYVGTLEHLLFTAELD
PHILAVYQQFCALQL
NT seq
2388 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaggagacgacatagcgacgagaatgatggtgcacagcctcataagaggaggcgt
acctcagagcccattgagatcgaagaccgtctggagtcactcatctgcagagttggagag
aagagcacctcatctctggagagtaatctggaggggctggcaggggtgctggaagcggac
ctccccaactataagagcaagatcctgcgcatcctctgttctgtggctcgtctgctccca
gagaagctgactgtgtacaccacactggtcgggctgctgaatgcacggaactacaacttc
ggaggagagatggtggaggcaatgatccgcacactcaaagagacgctgaaggccaacctg
tttgatgaggccgcctacctggtgcgtttcctatctgacctggtgaattgtcacgtcatt
gctgctccctccatggtggccatgtttgaaaactttgtggctgtcattcaagaagaggaa
ataccccaggtgcgtagtgactggtttgtgtatgcagtgctgtcttctctaccttgggtg
gggaaggagttgtatgagaagaaggacgtggagatggaccgtctgctcaaccagatagag
gcctacctcaatgggaggcagaagacccatgtacccatgctgcaggtgtggagtgctgac
aaaccacacccacaggaagagtatcttgactgtttatgggctcaagttcagaagctgaag
aaggatcgttggcaggagcgtcacatcatgcgtccgtacgtggccttcgacagtgtgctg
tgtgaggcgctacagcacaacctgccccccttcaccccgcccgcacacacctctgacgcc
tgctacccaatgccccgcgtcgtctttcgcatgttcgactacactgacgcccctgagggt
cctgtgatgccagggagtcattcggtggagcggtttgtgattgaggagaatctgcactgc
atcatcaagtctcactggagggagaggaagaccagtgctgcccagctactcagctatcct
ggcaagaacaagatcccgctgaactaccacatagttgaggtgatctttggagaattgttc
cagctcccactccccccccacatagaggtgatgtacacgtccctgctcattgaactctgc
aagctacagcctggatcactgcctcaagtcctggcccaagctacagagatgctgtacatg
agactggacaccatgcacaccacctgcatcgatcggttaatcaactggttcgcacatcat
ctaagcaactttcagttccgctggagctgggatgactgggcggattgcttgactgtggat
attgataagcccaaacccaagtttgtgaaagaggtgcttgagaagtgcatgaggctgtcg
taccaccagcggatagtggacattgtccctcccagtttctctgctctaattccagctgat
ccacttttccagtacaaatatggagaagacaccagcagttccttgcctggataccctgta
tcgatcaccgttggcaacgccatcaagaacagggcatcaaatgatgaaatcatcaccgtc
ttgaaggatgtgcccaaccccaaccaggaggatgacgatgatgagggtgagagcttcaac
cctctgaagattgaggtgttcctgcagacgcttctccatctggctgccaagtccttcagt
cactcattcagtgcactcgccaaattccatgaagtgctgaaggccatatcagattgtgat
gaggggaaacttcacgtccttaaagtggtctaccaggtgtggaagaaccacccacagatg
atagcagtgctggtggataagatggtgcgcactcagattgtggactgtgctgccgtagcc
aactgggtcttctctcaggacatggcccatgacttcacacggttctacatgtgggagatt
ctccactcaaccatgaggaagatgaataagcatgtccagaaggtccaaaaggagctggag
gaggccaaagacaagctggaaaaacaacaacacaagaagaaggacagtggggacgaggag
gaaatggacaagttgagtggggacgaggacatgcagctggaggagcagatcgagcgtctg
caggagaaggtggagtcggcgcagagcgaacagaagaacctcttcctcgtcatctttcag
aggtttataatgatgctgactgagcacctggtccgctgtgagactggaggcatcgacttc
aacaccagctggtataagatctgcattgagagactgcagcaggtcttcctcatgcatcac
agcaccatccagcagtacgtggggacgttggagcatctgctgttcacggccgagctggac
ccccacatcctggctgtctaccagcagttctgcgccctccagctctga
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