Clupea harengus (Atlantic herring): 105888822
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Entry
105888822 CDS
T09045
Symbol
trub1
Name
(RefSeq) probable tRNA pseudouridine synthase 1
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
char03016
]
105888822 (trub1)
Enzymes [BR:
char01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
105888822 (trub1)
Transfer RNA biogenesis [BR:
char03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
105888822 (trub1)
Prokaryotic type
105888822 (trub1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
Pus10_C
Motif
Other DBs
NCBI-GeneID:
105888822
NCBI-ProteinID:
XP_012670018
Ensembl:
ENSCHAG00000026495
UniProt:
A0A6P3VEF1
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All DBs
Position
23:8516575..8525781
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AA seq
303 aa
AA seq
DB search
MAATGANVVQNVSSLSKLQSLNGICAIYKKCGPTSADVLNSFKEKLLKEAGVANPNPRKR
KKQALKIGHGGTLDSAASGVLVIGIGDGTKMLTTMLAGSKKYTAVGELGKATDTLDATGA
VVQEKSYDHVTREALEEHLQKFTGDIMQVPPLYSALKKDGKRLSVLLKQGHEVEAKPARP
VTVYSLALTAFTPPLFTLDIECGGGFYVRSLVDDLGKALLSCAHVRELVRTKQGQFTLDE
HMLKEERWTLQDISAALQACPPSAKQQPGPNGKAKPDNGSKALSQASTTEQAEDGLDEAN
SRD
NT seq
912 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgactggtgcaaatgttgtgcaaaatgtgtcctccttatcgaaattgcagtct
ttgaacggaatatgtgcaatttacaaaaagtgcgggccaacatctgctgacgtgttaaac
tcttttaaagagaagctcttgaaagaggctggtgtggcaaatcccaatccccgtaagagg
aaaaaacaagctctgaaaatcggtcatgggggcactctggatagcgcggcctctggtgtt
cttgttatcgggataggagatggcacaaagatgctcaccaccatgctcgcagggtcaaag
aaatacactgcagtgggcgagttgggaaaagccacagacacgcttgatgctactggcgct
gtagtgcaagagaagagctatgatcacgtgacccgagaggccctggaggagcatctgcag
aagttcactggagacatcatgcaggtccctcctctctactcggctctgaagaaggatggc
aagcgtctgtctgtgctcctgaagcagggccatgaggtggaggccaagcctgcccggccc
gtcaccgtctacagcctcgcgctcacagcctttaccccgccgctcttcaccctggacata
gaatgtggcggaggattctacgtcaggagcttggtggatgaccttggaaaagccctgttg
tcgtgcgctcacgtgcgtgagctggtgcggaccaagcagggccagttcaccctggacgag
cacatgctgaaggaggagcggtggaccctgcaggacatcagcgccgccctgcaggcctgc
cctccgtccgccaagcagcagccggggccaaacggaaaagcgaagcctgacaacggcagc
aaagcgctttcccaggccagcacaacggagcaggcagaggatggcttagatgaagccaat
agcagggactga
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