Clupea harengus (Atlantic herring): 105888869
Help
Entry
105888869 CDS
T09045
Symbol
rnf40
Name
(RefSeq) E3 ubiquitin-protein ligase BRE1B
KO
K10696
E3 ubiquitin-protein ligase BRE1 [EC:
2.3.2.27
]
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
char04121
]
105888869 (rnf40)
Enzymes [BR:
char01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
105888869 (rnf40)
Ubiquitin system [BR:
char04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
BRE1 proteins
105888869 (rnf40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRE1B
zf-C3HC4
CC_Bre1
BRE1
zf-C3HC4_3
zf-C3HC4_2
zf-RING_5
zf-RING_2
zf-RING_UBOX
zf-rbx1
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
105888869
NCBI-ProteinID:
XP_012670080
Ensembl:
ENSCHAG00000027002
UniProt:
A0A6P3VFA2
LinkDB
All DBs
Position
23:complement(9192314..9218013)
Genome browser
AA seq
1010 aa
AA seq
DB search
MSGTGGGKRASGGDSPPGPPEKKSKKEEKTTTTLIEPIRIGGVASTEEMDMKVIQFKNKK
LCERLEQRQVMEDELREKIEKLEKRQATDDTTLLIVNRYWTQLDENLQVLLRRVKPESPP
EPTAASDSALAPEPAAPTPALAPERPPVPAPEPDTEPPPAPSSADGEDVPAPPQPPAPEE
EEDRQQPKQPPPQQDGLDQPATVVPRADGITALPPPTPLSDSAKEFLTTLDHCCEEELGL
QLQDRMQFSKGAMACMVCVFDRLHSNIEDLCARVQMAVSEDDNPREILAQNRSLLEENRR
LQDLASSLQGKHHKVSMEYNELVDKVTGSETKVSEMETAVEDLQWDIEKLRNREQKLNKH
LAEALEQLNSGYYATGSSGGLPGGQITLSIQKFELLNAELEQNQELANSRMAELEKLQQE
LQEAVKESEKLKMDLRNIPEEVVKETPEYKCLQSQFSLLYNESLSVKTQLDEARALLLTA
KNAHLRQIEHMESDELSLQKKLRTEVIQLEDTLAQVRKEYEMLRIEFEQNLAANEQAGPI
NREMRHLISSLQNHNHQLKGDVQRYKRKLRETQMEINKLRCQSGEASGALLLEEPVTDGG
LEVKKEEDEDQQEEEEEERRRELERQRAREREREAERERERERERERQRSEELKRKDSDT
LKMLRAELKKAQESQKEMKLLLDMYKSAPKEQRDKVQLMAAERKAKAEVEELRVRVRELE
ERERKESKKLADEDALRKIRVAEETIDHLQKKLAATKQEEEALLSEMDVTGQAFEDMQEQ
NSRLLTQLREKDDANFKLMSERIKSNQIYKLLREEKEELADQVLTFKTQVDAQLLVVQKL
EEKEGILQSTLAALEKEVAIRSQSLELNKRKAVEAAQLAEDLKVQLEHTQNKLREIQASV
QDNRTARERESSNLKRAQEDLSRLRRRLEKQKKVEMYTDADEILQEEINQYKAKLRCPCC
NTRDKETVLTKCFHVFCYECLKTRYDTRQRKCPKCNAGFGANDFHRIYIT
NT seq
3033 nt
NT seq
+upstream
nt +downstream
nt
atgtctggcacaggtggagggaagcgtgcctcaggtggggacagtccccctggtccacct
gaaaagaaatcgaagaaagaggagaagacaaccacaactctaatcgagcccattcgtatt
ggaggagttgcctccacggaagagatggacatgaaggtgatccagttcaagaacaagaag
ctgtgtgagcggctggagcagcgacaggtgatggaggatgaattgcgagagaagatcgaa
aagttggagaaacgtcaggctactgatgacaccaccctgctcattgtgaatcgctattgg
actcagcttgatgagaaccttcaggtcctgcttcggcgtgttaagcctgagagccctcca
gagcccactgcagcttcagactctgccctggctccagagcctgctgcccccactcctgcc
ctggctcctgaacgccctccagtgcctgctcccgagccggacacagagcccccgccagca
ccctcttcagctgatggggaagacgtgccagctcctccacagcctcctgccccagaggag
gaggaggaccggcagcagccgaaacagccacctcctcagcaagatggcctggaccagcct
gccacagtagtgccacgggcagatggcatcacagcactccctccgccgaccccactgagt
gacagtgccaaggagttcctgaccaccctggaccactgctgcgaggaggagctgggcctg
cagctgcaggatcgcatgcagttcagcaagggcgccatggcctgcatggtgtgcgtcttc
gaccggctacactccaacatcgaggacctgtgcgccagagtacagatggcagtgagcgag
gatgataacccgagagagatcctggcccagaatcgctctctactggaggagaacaggaga
ctacaggacctcgcctcttcgctgcaggggaagcaccataaagtgtctatggagtataac
gagttggtggataaggtgactggctcggagacaaaggtgtctgagatggagacagctgtg
gaggacctgcagtgggacattgagaagctgcggaaccgagagcagaagctcaacaagcac
ctggctgaggccctggaacagttaaactcaggctactacgccacaggcagctcaggagga
ctccctggaggtcagatcaccctcagcatacagaagtttgagctgctcaatgccgagctc
gagcagaaccaggagctggccaacagccgcatggcggagctggagaaactgcagcaggaa
ctccaggaggccgtcaaggagagcgagaagctgaagatggatctgcggaacattccagaa
gaagtggtaaaggagacaccggagtacaagtgcctgcagtcgcagttctccctgctgtac
aatgagtctctcagtgtgaagacccagctggacgaggcacgggcgctgctgctgacggcc
aagaatgctcacctcagacagattgagcacatggagagtgacgagctgtccctgcaaaag
aagctccgcaccgaggtcatccagctggaggacacgctggcccaggtgcgcaaggaatac
gagatgctgcgcatcgagttcgagcagaacctggcagccaacgagcaagcagggcccatc
aacagggagatgcgtcacctgatcagcagcctacagaaccacaaccaccagctgaagggc
gacgtgcagcgctacaagaggaagctccgcgagacccagatggagataaacaagctgcgc
tgccagagcggggaagccagcggggcgctgttgctggaggagccggtgactgacgggggc
ctggaggtgaagaaggaggaggacgaggaccagcaggaagaggaggaggaggagcggcgg
cgcgagctggagaggcagcgggcgcgcgagcgtgagcgggaggccgagagggagcgagag
cgcgagagggaacgagagaggcagcgcagcgaggagctgaagaggaaggactcggacacg
ctcaagatgctccgtgccgagctgaagaaggcgcaggagtcccagaaggagatgaagctg
ctgctggacatgtacaaatccgcccccaaagagcagcgggacaaagtccagctaatggcc
gctgagaggaaggccaaagccgaggtggaagagctgagagtccgtgtgcgtgagctggag
gagagggagaggaaggaaagcaagaagctggcggatgaggatgccctgaggaagatccgg
gttgccgaggagaccatcgaccacctgcagaagaagctcgccgccaccaaacaggaggag
gaggcgctgctgagtgagatggacgtgacgggccaggccttcgaggacatgcaggagcag
aatagccggttgctgacgcagctccgcgagaaggacgacgccaacttcaagctcatgagc
gagaggatcaagtccaatcagatctataagctcctgcgtgaggagaaggaggagctggcc
gaccaggtgctcaccttcaagacccaggtggacgcccagctgctggtggtccagaagctg
gaggagaaggagggcatcctgcagagcactctggccgccctggagaaggaggtggccatc
cgttcacagtccctggagctcaacaagagaaaggctgtggaggcggcccagctggctgaa
gacctgaaggtgcagctggagcacacgcagaacaagctcagggagatccaggcgtctgtg
caagacaaccgcactgcccgcgagagggagagcagcaacctcaaacgagcacaggaggat
ctgtcgaggcttcgtcgcaggctggagaaacagaagaaggtcgagatgtacacagatgct
gatgagatccttcaagaggagatcaaccagtacaaggcgaaactgcgctgcccatgctgc
aacacacgtgacaaggagacggtgctcaccaagtgtttccacgtcttctgctacgagtgt
ctgaagacacgctacgacacccggcagaggaagtgtcccaagtgtaacgccggcttcggg
gccaacgactttcaccgcatctacatcacctag
DBGET
integrated database retrieval system
