Clupea harengus (Atlantic herring): 105888877
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Entry
105888877 CDS
T09045
Symbol
xrcc6
Name
(RefSeq) X-ray repair cross-complementing protein 6
KO
K10884
ATP-dependent DNA helicase 2 subunit 1
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
105888877 (xrcc6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
char03041
]
105888877 (xrcc6)
03400 DNA repair and recombination proteins [BR:
char03400
]
105888877 (xrcc6)
Spliceosome [BR:
char03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
105888877 (xrcc6)
DNA repair and recombination proteins [BR:
char03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA-PK complex
105888877 (xrcc6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ku_N
Ku
Ku_C
SAP
VWA
SAP_new25
Motif
Other DBs
NCBI-GeneID:
105888877
NCBI-ProteinID:
XP_031416767
Ensembl:
ENSCHAG00000012490
UniProt:
A0A6P8F0V4
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Position
23:complement(9506951..9512601)
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AA seq
610 aa
AA seq
DB search
MAEWGAYFRNEDEELEQEEGDEGGVDYKNTGRDSLVFLVDASKEMFIKGEDGEPSNFDMT
MQCIRSVYMSKIISSDRDLVALVFYGTEKSKNPRESFKHVYIYHDLDSPGARRVHDLDNL
RGDKGAQLAAQEMGSGQTSLGDALWCCSNLYSDIKLRLSHKRLMIFTSRDSPHNDDSNRD
RTARTKATDLKETGVIIDLMHLKKPDGFDVGLFFCDIVSPPEDDSELGLQLEPCGKLEDL
QKRVRAKDMKKRAQSRLTFSLGNGVKVAVGVYVLARTATKPPAVQLYRDTNEPVRTKTRL
FHTQTGSLLLPSDTKRAQVYGQKQIVMEKDEVDEIKKFDDPGLVLIGFKPMSKLKTHHHI
RPAVFIYPEEEQISGSSCVFVALLHRCSERNVFALCRYIPRRNTPPRFVALVPQKEELDQ
SQAQVKPPGFHAIFLPYADDIRTLDVHEGPTATSEQIDKMTEIVHKLRFKYRCDAFENPV
LQQHFRNLEALALDLMQPEDIEDFTMPKVEMMDGRVGLLAKEFKELVYPADYNPEGKPVA
KRKLAESGGGAEKKPKVEVSEEELRAHVEKGTLGKLTVPVLKEACKLFGVRTTGTKKQEL
IDHITACIAK
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atggctgaatggggcgcgtattttcggaatgaggacgaggagttggaacaagaggaaggc
gatgagggcggagtcgattataaaaacactgggcgtgacagccttgtcttcctggtggat
gcgtccaaagagatgtttataaaaggggaggatggagagccgtccaactttgacatgaca
atgcagtgtatacgtagtgtgtacatgagtaaaatcataagcagcgatcgagacctggta
gcactggtgttctatggtacagagaagagcaaaaaccccagagagtcctttaagcatgtt
tacatctaccatgaccttgactcaccaggggcccgccgggtccatgatctcgacaacctg
cggggggataagggtgcccagctggcagctcaggagatgggcagcgggcagacgtccctg
ggtgatgcgctctggtgttgctccaacctgtacagcgacatcaagctgcgcctctcccac
aagcgcctcatgatcttcaccagccgggactccccccataacgatgacagcaaccgagac
aggaccgcacgcaccaaggctacagacctcaaagagaccggtgtgatcatagatctgatg
cacctgaagaagccagatggatttgatgttggtctgttcttctgcgacattgtgagccct
cctgaagatgatagtgaactgggtctccaactggagccttgtgggaagctggaggacctc
cagaaaagagtccgagccaaagacatgaagaagagagcccagagcaggttgacattctct
ttgggaaatggtgtgaaggtggcagtgggtgtctatgtgctggcaagaactgccaccaag
cccccagccgtccagctttacagagacactaatgaacctgtgcgaactaagacccgtctc
ttccacactcagactggcagtcttctgttgcctagcgacaccaagagggcccaggtctac
ggacaaaagcagatagtgatggagaaagatgaggtggatgagattaagaagtttgatgat
ccaggcctagttctgatcgggttcaagcccatgagcaagctgaagacgcatcaccacatt
aggcccgcagttttcatctaccctgaggaggagcagatctcaggcagctcctgtgtgttt
gtggctttgctgcaccgatgcagcgagaggaacgtgttcgccctgtgcaggtacatcccc
agacggaacaccccacctcgctttgtggcgctggtgccccagaaagaggagctggaccag
agtcaggcccaggtcaaacccccaggtttccatgccatcttcctgccttatgcagatgat
atacgtaccttagatgtacacgaaggtcccacggcaacaagcgaacagattgacaaaatg
acagagattgtgcacaagcttcgattcaagtacaggtgtgatgcatttgaaaatccagta
ctgcaacagcacttcaggaacttggaggctttggccctggatctgatgcagccagaagat
attgaggatttcaccatgccaaaagtcgaaatgatggatgggcgtgttggactgcttgct
aaagaatttaaggagcttgtttacccagcagactacaacccagaaggaaaacccgttgcc
aagcgcaaactcgctgaatcaggaggcggggcagaaaagaaacccaaagtggaggtgtcc
gaggaggaacttcgtgctcatgtagagaagggtaccctgggaaaacttacagtgcctgtg
ctgaaggaagcctgcaagctgtttggagttcgcaccacaggaactaagaaacaggaactt
attgaccatatcacggcttgtatagccaaataa
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