Clupea harengus (Atlantic herring): 105888917
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Entry
105888917 CDS
T09045
Symbol
tap2a
Name
(RefSeq) antigen peptide transporter 2a
KO
K05654
ATP-binding cassette, subfamily B (MDR/TAP), member 3 [EC:
7.4.2.14
]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char02010
ABC transporters
char04145
Phagosome
char05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
char00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
105888917 (tap2a)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
105888917 (tap2a)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
105888917 (tap2a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
char02000
]
105888917 (tap2a)
Enzymes [BR:
char01000
]
7. Translocases
7.4 Catalysing the translocation of amino acids and peptides
7.4.2 Linked to the hydrolysis of a nucleoside triphosphate
7.4.2.14 ABC-type antigen peptide transporter
105888917 (tap2a)
Transporters [BR:
char02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB2, 3, 8, 9, 10 subgroups
105888917 (tap2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
SMC_N
AAA_22
AAA_30
AAA_15
RsgA_GTPase
Rad17
Motif
Other DBs
NCBI-GeneID:
105888917
NCBI-ProteinID:
XP_031442174
Ensembl:
ENSCHAG00000024184
UniProt:
A0A6P8GSL9
LinkDB
All DBs
Position
19:complement(12422924..12427940)
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AA seq
708 aa
AA seq
DB search
MRSFIVYVLVLSVDFVAFCVLDDRLSRWSDQGNATACLCWQWVATGIRWVLLSGVVYWAN
TGSSVVLKRWLTTHCLLGSLFKTGQFVLLGNYPLGTAWRWLSNVLAAASATLFWEFSCPD
KTDGSNGKQKTQKARVLFQRVILLYRPDYLLLMGAFIFLTLAVLCEMFIPFYTGRVIDIL
QSQYQWNEFVTAILFMGLFSLGSSISAGCRGGLFMCAINSFTFRVKIMLFRALMNQEIGF
YETTKTGDLTSRLSTDTNLMARAVALNVNVILRRFIKTLGMLSLMLSLSWKLTLLMLMET
PITGLLQNIYNTFYQKLSKDVQDSIARANDAAEEAVSGIRTVRGFNTERSESRRYNDRLM
DTHNLKNRRDTVRAVYLLVRRITEVGMKVAMLLYGRLIIQSGQMSTGNLVSFILYQSDLA
DSIRSLIYSFGDMLNSVGAAGKVFEYLDRKPEVSTEGNLQPDSLEGRVQFQNLTFSYPTR
RDQKVLTDFSLELKPGQMTALVGPSGGGKTTCVSLLERFYQAQEGEILLDGQPLQTYQHK
YLHRKVAMVGQEPVLFSGSVKDNITYGLGKCDLQRVQDAARKANAHGFISQLEKGYDTDV
GERGGLLSGGQKQRIAIARALIREPQVLILDEVTSCLDTESEQAVQQALASCPNQTLLVV
AHRLKTIERADQIVVIDNGAVIEKGTHKELMEKQGSYYRLKERLFTDS
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgcgctctttcattgtgtatgtattggtcttaagcgtcgactttgtggcattctgtgtt
ttagatgataggttatctcggtggtctgatcaagggaacgcgacggcttgtttgtgctgg
caatgggtagcgacaggaataagatgggtgctgttgagcggagtggtttattgggctaac
actggctccagcgttgtgctaaagcgttggcttacaactcactgtttgcttggttctcta
ttcaagactgggcaattcgtattgcttggcaattatccgctgggaacagcatggcgttgg
ttatcaaatgttcttgctgctgcatctgctactttgttttgggagttctcgtgtcctgac
aaaactgatggaagtaacggaaaacagaaaacgcaaaaggcacgcgtgctctttcagcga
gtcattcttctttacagaccagactacctgctactgatgggggcgttcatcttcctcaca
ctagctgttctgtgtgagatgttcattcctttttacactggcagagtgattgacatccta
cagtcgcagtaccagtggaatgagtttgtgactgcaattctgttcatgggcctcttctcc
ttaggaagctccatcagtgcgggatgccgaggggggctcttcatgtgtgccattaatagt
ttcaccttcagagtgaaaatcatgctgttcagagccctcatgaatcaggaaattggtttc
tatgaaactacaaagacaggtgatctcacgtctaggttgtcaacagacaccaatctgatg
gcacgggcggtggccctgaatgtcaatgtcatattacggaggttcatcaagaccttgggc
atgctctccttgatgctaagcctttcctggaagctcacgttgctgatgctgatggaaaca
ccaataactggcttgcttcagaacatatacaacacattctaccagaaactgtctaaagat
gtgcaagattctattgcacgagccaatgatgctgcagaagaggccgtgtcaggcatccgc
actgttcgagggttcaacacagagaggagtgaatcacgccgctataacgatcgcctgatg
gacactcacaacctgaagaatcgaagggataccgtcagggcagtgtacctgcttgtgcga
aggattacagaagttggcatgaaggtggccatgctcctctatggcaggctaatcattcag
tctggtcagatgagcacagggaatctggtgtccttcatcctgtaccagtctgacctggca
gacagcattagatctttaatctacagcttcggtgacatgctgaactctgtgggcgctgct
ggtaaggtctttgagtacctggacaggaagcctgaggtgagcactgaaggaaaccttcag
cctgattctctggagggacgtgtccagttccagaacctcaccttctcctaccccacccgc
cgtgatcagaaggtgctgacggacttctctctggagctgaaacctggacaaatgaccgcg
ttggtggggccttcaggtgggggcaagaccacctgtgtgagtctgctggaaagattctac
caggcccaggagggagagatcctcctggatggacagccactgcagacttatcagcacaaa
tatctgcacagaaaggttgccatggtgggtcaggaacctgtgctcttctcaggttctgtg
aaagacaacatcacctatgggctggggaaatgcgatctgcagcgagtgcaggacgctgcc
cgcaaagcaaatgcccatggcttcatctcccagctggagaaaggctatgacacagatgtg
ggagagagaggaggtctgctgtctggcggccagaagcagcgcattgccatcgccagggct
ctgatcagagagccacaggtccttatcctggatgaggtgaccagctgtctggacacggag
agcgaacaagcggtccaacaagcccttgcctcctgccccaatcagaccctgctggtggtt
gctcataggctgaagaccattgagagggcggatcagatcgtagtgattgacaacggggca
gtaattgagaagggcactcacaaagaactaatggaaaaacagggcagctactacaggcta
aaagaaaggctcttcactgacagttaa
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integrated database retrieval system
