Clupea harengus (Atlantic herring): 105888934
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Entry
105888934 CDS
T09045
Symbol
clp1
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1 isoform X2
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105888934 (clp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
char03019
]
105888934 (clp1)
Enzymes [BR:
char01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
105888934 (clp1)
Messenger RNA biogenesis [BR:
char03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
105888934 (clp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
AAA_16
TniB
ATP_bind_1
AAA_22
MMR_HSR1
AAA_18
CbiA
Motif
Other DBs
NCBI-GeneID:
105888934
NCBI-ProteinID:
XP_012670152
Ensembl:
ENSCHAG00000000474
UniProt:
A0A6P3VEV5
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All DBs
Position
20:1415190..1418538
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AA seq
448 aa
AA seq
DB search
MTTEGPEKSAEEGAGAASGAASASTGTRFDLEKETELRFEVEAGERVQLELLSGLAEIFG
SELNRNKKYSFGPGSKIAVFTWQGCSVSLSGKTEVAYISRDTPMLLYLNTHAALEQMRQQ
AERDNERGPRVMVVGPTDVGKSTVCRLLLNYAVRLGRRPTLVELDVGQSGVSVPGTMSAL
CIERPADVEEGFSVQAPLVYHFGSTTPGTNIKLYNKLTSTLAEVFSQRCEVNRKASVGGC
IINTCGWVKGSGYQALVHCASAFQVDVVLVLDQERLYNELKRDLPHFVRVVLLPKSGGVV
ERSKDCRRESRDEKIREYFYGFRGTSFYPHAFDVRFADVRIYKIGAPSIPDSCLPLGMSQ
DDTQLKLVPVSPGRDLTHHVLSVSCAEDDTGDGSSARGRGVLENPVCGFIVVTAVDTQAQ
VMTVLSPAPRPLPRHTLLIMDIRFIDLK
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atgaccactgaaggtcctgaaaaatcggcagaggagggtgctggagccgcgagtggggca
gccagcgcgagcacgggaacccgctttgacctcgagaaagagacggaacttcgatttgag
gtggaggcgggggaacgagtacagctagaactcctctctgggttagccgaaatatttggc
tctgaactcaacaggaacaagaaatactcatttggtccaggttcgaaaatcgctgtcttc
acttggcaaggctgcagcgtatccctctctgggaagacagaggttgcctatatttccaga
gacaccccgatgcttctgtatcttaacacccatgctgcattggaacagatgaggcaacag
gctgagcgggataacgagagaggcccacgggttatggtggtgggtcccacagacgtgggg
aaatcaacagtgtgtcgtctgctgctgaactacgctgtgaggctgggcagaagaccgacc
ttagtagaactggatgtgggccaaagtggtgtctcagtgccaggcacgatgtcggctctg
tgcattgagcgcccagctgatgtagaggaaggcttctcagtccaggctccactggtctat
cactttggttccacgacccctggaaccaacatcaaactctataataagctgacatccacc
ctagctgaggtgttctcgcagcgctgtgaggtcaaccggaaggcgagtgtgggcggctgc
atcatcaacacctgcggctgggtgaagggctcaggctaccaggcactggtacattgcgct
tcggccttccaggtggatgtggtcctggtgctggaccaggagcggttgtacaacgaactg
aagcgtgacttgccccactttgtgcgcgtggtgctgctccccaagtcgggcggcgtggtg
gagcgatcgaaggactgccggcgggagtcgcgcgacgagaagatccgcgagtatttctac
ggcttccgcggcacctcgttctacccgcacgcgtttgacgtgcgcttcgccgacgtgcgc
atctacaagatcggcgcgccgtccatcccagactcgtgcctgccgttggggatgtcacag
gatgacacacagctcaagctggtcccggtgagtccaggccgagacctgacgcaccacgtc
ctgagcgtgagctgcgctgaggatgacacgggcgacggaagctcagcgaggggcagaggg
gtgctggagaaccccgtttgtggctttattgtggtgactgcagtagacacacaggctcaa
gtgatgacggtgctttcacctgcacccagacccctgccaaggcatacgctgctgataatg
gacattcgcttcattgacctcaagtag
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