Clupea harengus (Atlantic herring): 105889067
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Entry
105889067 CDS
T09045
Symbol
lingo1b
Name
(RefSeq) leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1-B isoform X2
KO
K23533
leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
char04131
]
105889067 (lingo1b)
Membrane trafficking [BR:
char04131
]
Endocytosis
Lipid raft mediated endocytosis
RhoA-dependent endocytosis
105889067 (lingo1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_5
LRR_4
I-set
Ig_3
Ig_2
ig
LRR_9
LRRNT
LRR_EndoS
V-set
Motif
Other DBs
NCBI-GeneID:
105889067
NCBI-ProteinID:
XP_012670281
Ensembl:
ENSCHAG00000027479
LinkDB
All DBs
Position
6:28889734..28905818
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AA seq
622 aa
AA seq
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MTIVVTSRMAAGEAGGSNYLVACWQPILILMLGTVLSGSATGCPSRCECVGQERSVACHR
RKLIALPEGIPIETRLLDLSKNRLKTINPEEFINYPHLEELQLNENIISVIEPGAFNNLY
GLRTLGLRNNKLKLIQLGVFTGLSNLTHLDISENKIVILLDYMFQDLYNLKSLEVGDNDL
VFISHRTFHGLSGLEQLTIEKCNLTSLPKEALSHVHNLLTLRLRHLNINAIRDHSFWKLY
RLQVLEIAHWPLLDTMTPKSLYGLNITTLSITHCNLTAVPYQAIRHLVYLRTLTLSFNPI
HTIEGNLLHHLLRLQAFHLVGGRLATIEPYSFRGLNYLKVLNVSSNILSTLEESAFHSVG
NLETLALHDNPLACDCRLLWVFRRRWRLNFNRQQPTCASPEFVQGKEFKDFPDVLPAKYF
TCLKSKIRDRKAQHKFVDEGTTVHFACQADGDPAPVTIWQTPRKQFITIKTIGRLSVSPD
GTLEVRYAQIQDNGTYTCIASNAGGNDTRLAHLHVQSYSPNWPHQPNKTLAFIYNQPSDS
GANATTGMVPFPFDVKTLIIATTMGFISFLGVVLFCLVLLFLWSRGKGNAKPNIEIEYVP
RRTDAGDSSPTDGPRKINMKMM
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgacgattgtggtaaccagcaggatggcggctggcgaggcaggggggtccaactacctg
gtggcctgctggcagcccatcctgatcctgatgctgggcaccgtgctctccggctctgcc
acgggctgcccgtctcgctgtgagtgcgttggccaggagcgctcagtcgcgtgccatcgg
cgtaagctcatagcgctccccgaagggatccccatcgagacgcgactgttagacctcagc
aaaaaccgcctgaagaccatcaatccagaggagtttatcaactatccccacctggaggag
ctgcagctgaatgagaacataatctccgtcattgagccgggagccttcaacaatctttat
ggcttgcggacgttgggcctgcgaaacaataagcttaagctcattcagctgggtgtcttt
acaggattaagcaacctgacccatctggacatcagcgagaacaagattgtcattctgctg
gactacatgtttcaggacctgtacaacctgaagtcgctggaggtgggagacaacgacctg
gtcttcatctcccaccgaaccttccatggcctcagtggcctggagcagctcaccatagag
aagtgtaacttgacctctctgcccaaagaggccttaagccatgtccataacctgctgaca
ctgaggctgcggcatctcaacatcaatgccattcgggatcactccttctggaaactctat
cgcctacaggtgctggagatagcacactggccactcctggatactatgaccccaaagtct
ctctatgggctcaacatcactaccttgtcaatcacccactgcaatctcacagccgtccct
tatcaggctattcgccacctagtttaccttcgcactctcactttgtctttcaatcctatt
catactattgaagggaacctactgcaccacctgctcaggcttcaggcctttcatttggta
gggggtagactggccacgatcgagccgtactccttcagagggcttaactaccttaaagtt
ctcaacgtgtcaagcaatatcctcagcactttagaggaatctgcctttcactcagtgggc
aacctggagaccttagcgctccatgataaccccttggcctgcgactgccgtctcctgtgg
gtgtttcgccgacgctggaggctcaactttaatcgtcagcagcccacgtgcgcctcgccg
gagtttgtgcaaggcaaggaattcaaggatttccctgacgttctgccagccaagtatttc
acctgccttaagtcaaagatccgggaccgcaaggcccagcacaaatttgtggatgaggga
accacggttcattttgcatgtcaagccgacggtgatccagccccggtgaccatatggcaa
acgccacggaagcagttcatcaccatcaaaaccattgggcgactcagcgtatccccggat
ggcaccctggaggtgcgctatgcccaaatccaagacaatggcacatacacgtgcatcgcc
agcaatgcagggggaaatgacacccggcttgcccacttgcatgtgcagagctattccccc
aactggccccatcagccaaataaaacattagccttcatttacaatcagcccagtgacagt
ggagccaatgccaccacaggaatggtgcccttcccatttgacgtgaaaactctgatcatt
gccaccacgatgggatttatttcattcctcggcgttgtgctcttttgtcttgttctcctc
ttcctctggagccgagggaaaggcaacgcaaagccaaacattgagattgaatatgtacct
aggaggacggatgctggcgacagcagtccaactgacgggccccgtaaaatcaatatgaaa
atgatgtaa
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