Clupea harengus (Atlantic herring): 105889090
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Entry
105889090 CDS
T09045
Symbol
usp8
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 8
KO
K11839
ubiquitin carboxyl-terminal hydrolase 8 [EC:
3.4.19.12
]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04137
Mitophagy - animal
char04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
char00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
105889090 (usp8)
04137 Mitophagy - animal
105889090 (usp8)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
char01002
]
105889090 (usp8)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
char04131
]
105889090 (usp8)
04121 Ubiquitin system [BR:
char04121
]
105889090 (usp8)
Enzymes [BR:
char01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
105889090 (usp8)
Peptidases and inhibitors [BR:
char01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
105889090 (usp8)
Membrane trafficking [BR:
char04131
]
Endosome - Lysosome transport
Others
Others
105889090 (usp8)
Ubiquitin system [BR:
char04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
105889090 (usp8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
USP8_dimer
WW_USP8
UCH_1
CDC45
Motif
Other DBs
NCBI-GeneID:
105889090
NCBI-ProteinID:
XP_012670304
Ensembl:
ENSCHAG00000024764
UniProt:
A0A6P8FQR3
LinkDB
All DBs
Position
6:28311945..28327104
Genome browser
AA seq
1066 aa
AA seq
DB search
MPAVSTGAKELYLSTSLGELNKKSEFKPDKTSTRHYVQSACKMFKAAEECRLDRDEEKAY
VLYMRYLTVYDVIKKRPDFKQQQDYYLSMLGPSSFKKAIEEAEKLSVSLKLRYEEVEVRK
KLEEREKQEEKRRKKEKQEKDEERSVSKGSTVSNKDNRKVKGEQNDSKNVPSKAAVPMGG
ITAEKLYRMMIDQSLSVIVMDARSQRDFEESQIQVPAQSYISVPEEAVSPGITVNQIEVK
LPEASKELWKRRGFVDYVVLLDWFSCVADLKLGTTLQSLKDALFKWDSTTILRSEPMVLE
GGYESWLLFYPMYTTNAKVKPPRQQASSAIPQLNFSYPSLEEPKPPAAPEPEPMVQVNGR
AADEGPLHEPAAPELSTEAPGVLDGPAPTAAERTNKATPQSQTGVTVKPIPQIDRSKKPS
VKISDGTRPNEPQTKDSQLPQNGPVMPVRSVKPFFESGGQLSEEERSQIHAEAAGVSEKA
RWEMEQRRQAQRSQEEEQDEKERRAKEEREERQEKEEREKKRPEEEEEEEKKKQQERGRL
ERQKAEEEDQVREERMKRGQRTQHGEAQPKSVSLDSPMPNNIVSEIKREPLTRARSEEMG
RSVPGMPDGWMKFLDTVTGTYRYYHSPTNRVHLYPPEVSVPQTPPSTPKQKPSKPPEVER
DREQSKLKRSYSSPDITQDLRDEGQKKPTPTPTINRETKPITASTYAKVEISRPSAVKIR
SLNPTFGGLGASLTGLRNLGNTCYMNSILQCLCNTPVMADYFNKNRYQDDINRANILGHK
GEVAEEFGVIMKALWSGQYKCITPRDFKITIGKINDQFSGYEQQDSQELLLFLMDGLHED
LNRADNRKRYKEEPNDHLDDPSAADLAWGKHKLLNASIIVSLFQGQFKSTVQCLTCHRKS
RTFEAFMYLSLPLASPNKCSLQECLKLFSKEERLTDVNKVFCRHCKAHRDSTKKLEIWKV
PPILLVHLKRFSYEGRWKQKLQTTVDFPLESLDLAQYVIGPKPSQKGYNLFGVSNHYGGL
DGGHYTAYCRNNPKQRWFKFDDHEVADMSSSSIKSSAAYILFYSSL
NT seq
3201 nt
NT seq
+upstream
nt +downstream
nt
atgccggctgtttccacgggggcgaaagagctctacctgtcaacgtctctgggtgaactg
aacaagaaatcagaattcaagccggacaaaaccagcacaaggcattatgttcagagtgcc
tgtaagatgttcaaagctgcagaggagtgtcgacttgacagagatgaagaaaaggcctat
gttttgtacatgaggtacctgacagtttatgatgtgattaagaagagacctgacttcaaa
cagcaacaggattattacttgtcaatgcttggaccatccagctttaaaaaagccatcgag
gaagccgagaaactatcagtcagtctaaagctccgatatgaggaagttgaagtacgcaaa
aaacttgaggagagggagaaacaagaggagaagagacgaaaaaaagagaagcaagaaaag
gatgaggaacgatctgtatcaaaagggtcaactgtctccaacaaagacaataggaaggtg
aaaggggaacagaatgactcaaaaaatgtaccatctaaagctgctgtgccaatgggaggg
atcactgctgagaagctctatcgcatgatgattgaccagagcctcagtgtcatcgttatg
gatgccaggagccagagggactttgaggagtcgcaaattcaagttccggcccagagctac
atcagtgtcccagaggaggccgtctctccggggataactgtaaaccagattgaggtgaag
cttccggaggcctcaaaagaattgtggaagcgtagaggttttgtggattatgtggttctg
ctagactggttcagctgtgtcgcagacctcaaactggggaccacactgcagagcctgaaa
gatgcccttttcaagtgggacagcaccaccattctccgcagtgagcccatggtgttggag
ggtggctatgagagctggctgctcttctaccccatgtacaccaccaatgctaaagtcaag
ccaccaagacagcaggcctccagtgccatcccacagctgaacttcagctacccctccctg
gaggagcccaaaccaccagcggcccctgagcctgagccgatggtgcaggtgaacgggaga
gcagcggatgagggccctctacacgagccagcagctccagagctctccactgaggccccc
ggtgtcctcgatgggcctgctcctacggcggccgagaggaccaacaaagctaccccacag
tcgcagactggagtaacggttaaaccaattcctcagattgatcgcagtaaaaagccctcg
gtcaaaatctcggacggcaccagacccaacgagccccaaaccaaggactctcagctgcct
cagaacggcccggtgatgcctgtccgctcggtgaagccgttctttgaatccggcgggcag
ctgtcggaggaggagcgcagccagatccacgccgaggcggccggcgtgagtgagaaggca
cgctgggagatggagcagcgcaggcaggcccagcgatcccaggaggaggagcaggacgag
aaggagcgccgcgccaaggaggagagggaggagaggcaggagaaagaggaacgggagaaa
aagaggccagaggaagaggaggaggaggagaagaagaagcaacaggagcggggcaggctg
gagcggcagaaggctgaagaggaggatcaggtgcgagaggagaggatgaagcgagggcag
aggacgcagcatggagaagcacagcctaagagtgtctcactggactcacccatgcccaac
aacatcgtcagtgagatcaagcgggagcctctaaccagagcacgcagtgaggagatggga
cgaagtgttccaggtatgccagacgggtggatgaagtttctggacacagtgactggtacg
taccggtactaccactccccgaccaaccgggtgcacctgtacccccctgaggtgagcgtg
ccccagacacccccttccacgcccaagcagaagccgtcgaagccccccgaggtggagcgg
gaccgcgagcagtccaagctcaagcgctcctactcgtccccggacatcacccaggacctg
cgtgacgagggccagaagaagcccacccccacacccaccatcaacagagagaccaagcct
ataactgctagcacatatgcgaaggttgaaatttcaagaccgtcagcagtcaagatccgt
agtctgaaccccacattcggaggcctgggtgcgtctctgacaggcctgaggaacctgggg
aacacctgctacatgaactccatcctgcagtgtctgtgtaacacgccagtcatggcagat
tacttcaacaagaaccgctatcaggacgacatcaaccgagccaacatcctgggccacaag
ggggaggtggctgaagagtttggcgtgatcatgaaggcgctgtggtcaggccagtataag
tgcatcactccacgggacttcaagatcaccattggcaagatcaatgatcagttctccgga
tacgagcagcaggactctcaggagctgctgctcttcctcatggacggcctccacgaggac
ctcaacagagcggacaaccgcaagcgctacaaggaggagcccaacgaccacctggacgac
cccagcgcggccgatctggcctggggcaagcacaagctgctgaacgcctccatcatcgtg
tcactcttccagggtcagttcaagtccaccgtccagtgcctgacatgtcaccgcaaatct
cgcacctttgaggcctttatgtacctctccctgcccctggcctctcccaacaagtgctct
ctacaggaatgcctgaagctgttctctaaagaggagaggctgacggacgtaaataaggtg
ttctgcagacactgcaaagcccacagagattccaccaagaagctggagatctggaaggtt
ccgcccatcctgctcgtgcacttgaaaaggttttcatacgagggcagatggaagcagaag
ctgcagaccacagtggacttccctctggagagtctggacctggcgcagtacgtcatcggc
cccaagcccagccagaagggatacaacctgttcggcgtgtctaaccactacggagggctt
gacggcggccactacacagcctactgcaggaacaaccccaagcagcgctggttcaagttc
gacgaccacgaggtggcggacatgtccagctcctccatcaagtcgtcggccgcctacatc
ctcttctactcctccctgtga
DBGET
integrated database retrieval system
