Clupea harengus (Atlantic herring): 105889099
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Entry
105889099 CDS
T09045
Symbol
atg13
Name
(RefSeq) autophagy-related protein 13 isoform X1
KO
K08331
autophagy-related protein 13
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04136
Autophagy - other
char04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
char00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
105889099 (atg13)
04136 Autophagy - other
105889099 (atg13)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
char04131
]
105889099 (atg13)
03029 Mitochondrial biogenesis [BR:
char03029
]
105889099 (atg13)
Membrane trafficking [BR:
char04131
]
Autophagy
Autophagosome formation proteins
ULK complex
105889099 (atg13)
Atg1 complex
105889099 (atg13)
Mitochondrial biogenesis [BR:
char03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
105889099 (atg13)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG13
Motif
Other DBs
NCBI-GeneID:
105889099
NCBI-ProteinID:
XP_012670317
Ensembl:
ENSCHAG00000026928
UniProt:
A0A6P3VES7
LinkDB
All DBs
Position
6:25795719..25805009
Genome browser
AA seq
549 aa
AA seq
DB search
MDNDLSSQDKKDLDKFIKFFALKTVQVIVQSRLGEKICTRSSSSPTGSDWFNLAIKDIPE
VTHEAKKALAGQLPSIGRSMCVEISLKTSEGDSMELETWCLEMNEKCDKDIKVSYTVYNR
LSLLLKSLLAITRVTPAYKLSRKQGHDYVILYRIYFGEVQLAGLGEGFQTVRVGVVGTPI
GTITLSCAYRTNLAFMSTRCRDSQFERTAPIMGIIIDHFVERPFGNVGHMHPCNYRAPGE
EEGGYAGVEDSQEVCTTSFSTSPPSQCVVTVSKAHLKTPKPVLVNTLKVPLMGLAFSHQL
YSSRLSYQPPALGAADLCNPATCGGAHPHQMAVPGKEGGVPQVPMQPYHGAQAEHGRMPS
CPAHDTAHHIPATPSSSGEDAETCSRSSEQKSAGLADTLETTFTRKVGAFVNKPTTQITT
ASLDLPFAAFAPRAYDLEENDPMVHPPDSPDTSSPLQGSLHSQGSSETGEQAQEDFVMVD
FKPAFSKDDLLPMDLGTFYREFQNPPQLASLSIDVSAQSMAEDLDSLPEKLAIYEKNIDE
FDAFVETLQ
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atggacaacgatctgagctcacaggacaaaaaggacctggacaaattcattaaattcttt
gcattgaagactgtgcaggtcatcgttcaatctcgtctcggagagaaaatatgcacgcgc
tcatcatcttcacccactggctcagactggttcaatttagccatcaaagatattcctgaa
gtgactcatgaagccaagaaagctttggctggacagctacccagcattgggcgctccatg
tgtgtggaaatctcactcaagacttcagagggggattccatggaacttgagacatggtgt
cttgaaatgaacgaaaagtgtgacaaagacatcaaagtctcttacactgtttataatcgc
ctttcattactcctgaagtcactgctggctatcacaagggtgaccccagcctataagttg
tctcgaaagcaaggccatgactatgtcattttatacaggatatattttggggaggttcaa
ttggcaggacttggagaaggattccaaacggtccgtgtgggggtcgtgggcacacccata
ggcacaatcaccctgtcttgtgcctataggactaacctggcctttatgtctacaaggtgc
agagactcgcagtttgaaagaacggcccccatcatgggcattatcatcgatcactttgtc
gagcgtccctttggaaacgttggccacatgcatccatgcaactacagggctcccggggag
gaggaaggaggttatgcaggagtagaggattcccaggaggtgtgcaccacatctttctcc
acctctccaccctctcagtgtgtggtcactgtaagtaaggcccatttaaagacgcctaag
ccagttctggtgaacactctgaaggtcccgctgatgggcttggccttttcgcaccaactc
tacagctctcgactttcctaccagcctcctgctttgggagcggccgacctttgtaaccct
gccacctgtggtggtgcccatcctcaccagatggcagtacctggaaaggagggtggagtt
ccccaggtgcccatgcagccctatcacggagcccaggcagagcacggccggatgccctcc
tgccccgctcatgacacggcccaccacatccctgccaccccttcaagcagtggagaggat
gcagagacatgctccaggagcagtgaacagaagagtgccggtctagcagacaccttggag
accacattcacacgcaaagtgggagcctttgtcaacaagcccacaacacagataacaact
gccagtctggatttaccatttgcagcttttgcaccccgggcctatgacctggaggagaat
gaccccatggtccacccaccagattctccagacacatcgtctcctcttcaaggcagcctg
cattcccagggctccagtgagactggagagcaggcgcaggaggactttgtcatggtggat
tttaagccagctttctccaaggatgacctcctgccaatggacttgggaacattctacagg
gagttccagaaccccccacaattggctagtctttccatcgatgtcagtgcacaatccatg
gctgaagatcttgactctcttccagagaagctggctatatacgaaaagaatattgatgaa
tttgatgcatttgtggaaacattacagtag
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