Clupea harengus (Atlantic herring): 105889107
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Entry
105889107 CDS
T09045
Symbol
cpeb1b
Name
(RefSeq) cytoplasmic polyadenylation element-binding protein 1
KO
K02602
cytoplasmic polyadenylation element-binding protein
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04114
Oocyte meiosis
char04914
Progesterone-mediated oocyte maturation
Brite
KEGG Orthology (KO) [BR:
char00001
]
09140 Cellular Processes
09143 Cell growth and death
04114 Oocyte meiosis
105889107 (cpeb1b)
09150 Organismal Systems
09152 Endocrine system
04914 Progesterone-mediated oocyte maturation
105889107 (cpeb1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
char03019
]
105889107 (cpeb1b)
Messenger RNA biogenesis [BR:
char03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
105889107 (cpeb1b)
Factors involved in mRNA localization
Trans-acting binding proteins
105889107 (cpeb1b)
mRNA cycle factors
P-body specific factors
105889107 (cpeb1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CEBP1_N
RRM_7
CEBP_ZZ
RRM_1
ANCHR-like_BBOX
zf-HC5HC2H
Motif
Other DBs
NCBI-GeneID:
105889107
NCBI-ProteinID:
XP_012670327
Ensembl:
ENSCHAG00000021921
UniProt:
A0A6P3VET2
LinkDB
All DBs
Position
6:complement(28022409..28032763)
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AA seq
565 aa
AA seq
DB search
MAFSMRDEPSIHNRWEPEAPALSSCSNANIFRRMNSMLGNSLDLTGVCSTPGGRGRRDPL
FDRQDSDFSAAASRMLFPNATQEPPRGLPNINDLGLGLQSLSLSGWDRPWSNQESEPVPQ
ANSSSMLGMLGSPLSQLRHKPMGFPSNEAMAGADFLDKFPGMVRMNPRLDSRSFLDSRSS
SPVDSETSGFSSSSDHLSDLLSSLRISPPLNFVMSNMQKDHLKLALGQRLDHDNSPLTPP
PSATPANALAKRWPGASVWPNLDLMDAPDETFSIEREARLHRQAAAVNEATFTWSGQLPP
RNYKNPMYSCKVFLGGVPWDITEAGLNNTFSSFGPLTVEWPGKDGKHPRCPPKGNMPKGY
VYLVFESERSVRSLLQACTQDLLHPDDLSEYYFKMSSRRMRSKDVQVIPWVISDSNYVRC
PSQRLDPSKTVFVGALHGMLNAEALASIMNDLFGGVMYAGIDTDKHKYPIGSGRVTFSNQ
RSYLKAVSAAFVEIKTPKFTKKVQIDPYLEDSMCQLCNRQTGPFFCRDQNCFKYFCRSCW
HWQHSMDILSNHRPLMRNQKSRDSS
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atggcattttctatgagagacgaacctagcatccataacagatgggagcctgaggcccct
gctttatcttcatgcagtaatgccaatattttccgcagaatgaatagcatgctgggcaac
tctttggaccttactggcgtgtgcagcacacccggtggcaggggaaggcgagaccctctg
tttgaccggcaggactctgacttctctgctgcggcgagcaggatgcttttcccaaacgcc
acacaggaacccccgcgggggctgcccaacatcaatgacctgggcctaggcctgcagtct
ctcagcctgtctgggtgggaccgcccatggagcaaccaggagagcgagccggtgccccaa
gcaaactcctcctccatgttaggaatgcttggaagtcccctaagccagctccgccacaaa
cccatgggctttccttccaatgaggcaatggcgggtgctgacttcctggataagtttccc
ggcatggtccgaatgaacccacggctggactcccgctccttcctggactctcgctccagc
agcccggtggactctgagaccagcggcttcagctccagctctgaccacctctctgacctc
ctgtcatccctgaggatctctcctccgctgaactttgtgatgtccaatatgcaaaaagat
catctgaagctggctctgggtcaaaggctggaccacgacaactctcctctcacccctcct
cccagtgccacgccagctaatgctctggccaaacgctggcccggggcatcagtgtggcct
aacttggacctcatggatgctccagatgagacatttagtattgaacgggaggccaggctc
catagacaagctgctgctgtgaatgaggccacttttacctggagcggacaactgccacct
agaaactacaagaatccaatgtattcctgcaaagtctttttgggaggtgtaccatgggat
attactgaggctggactgaacaacacattcagtagctttggccctctgactgtggaatgg
cctggtaaggatggcaagcatccacgctgccctcccaaaggtaatatgccaaaagggtat
gtctacctggtgtttgagtcggagaggtctgtgcgtagcctgcttcaagcctgcacccag
gatctcctccaccccgatgaccttagcgaatactactttaagatgtccagccgaaggatg
cgcagcaaggatgtgcaggtaattccatgggtgatttctgacagtaactacgtgcgatgc
ccctcccaacgcctggaccccagtaagactgtttttgtgggtgctctgcatggcatgctt
aatgctgaagctctggccagtatcatgaatgacctgtttggaggagttatgtatgcgggg
atcgacacagacaagcacaaataccccattggatctggtcgtgtcaccttcagtaaccag
cgtagctatttgaaggcggtcagtgctgcgtttgtggagattaaaaccccaaagtttacc
aagaaggttcagattgacccatatttggaggactcaatgtgccaactgtgcaatcgtcaa
actgggcctttcttctgcagagaccagaactgcttcaagtacttctgccgctcctgctgg
cactggcaacactcgatggatatcctgagcaaccaccggccactgatgcgcaaccagaag
agccgggactccagctaa
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