Clupea harengus (Atlantic herring): 105889133
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Entry
105889133 CDS
T09045
Symbol
cstf3
Name
(RefSeq) cleavage stimulation factor subunit 3
KO
K14408
cleavage stimulation factor subunit 3
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105889133 (cstf3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
char03019
]
105889133 (cstf3)
Messenger RNA biogenesis [BR:
char03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
105889133 (cstf3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
NRDE-2
PRP6_TPR
TPR_19
TPR_6
TPR_16
Motif
Other DBs
NCBI-GeneID:
105889133
NCBI-ProteinID:
XP_031425359
Ensembl:
ENSCHAG00000023488
UniProt:
A0A6P8FHL5
LinkDB
All DBs
Position
6
Genome browser
AA seq
716 aa
AA seq
DB search
MAAEGASDQAAEYIPEKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQ
FPSSGRFWKLFIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKE
KMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPM
INIEQLWRDYSKYEEGINVHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQ
NSPQEAQQVEMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDVWYEAAQY
LEQSSKLLAEKGDMNNAKLFSDEAANIYERAIGTLLKKNMLLYFAFADYEESRMKYEKTH
SIYNRLLTIEDIDPTLVYIQYMKFARRAEGIKHGRTVFKKAREDLRTRHHVYVTAALMEY
YCSKDKSVAFKIFELGLKKYGDIPEYILAYIDYLSHLNEDNNTRVLFERVLTSGSLSPEK
SGEIWARFLAFESNIGDLASILKVERRRFTAFKDEYEGKETALLVDRYKFMDLYPCSTSE
LKALGYKDVSRAKLAALLPETVVTPSTPAQKEEGDRKPEYPKPDTNQMIPFQPRHLAPPG
LHPVPGGVFPVPPTAVLLMKLLPPPACFMGPFVQVDELIENFRRCTLPETVDAAVELITG
RQPELTSEGNGPLENHAMANKSLKRPNADSDEEDDKGAVAPPVHDIYRARQQKRIR
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atggctgcggaaggagcgtccgaccaggctgcagaatacatcccagagaaggtgaaaaaa
gcagagaagaagttggaagaaaatccttatgacctggacgcatggagcattctgattcga
gaagcacagaatcaacctatagacaaagcaaggaagacctatgagcgacttgtcgcccaa
ttcccaagttcgggcaggttctggaaactattcatagaggctgagataaaggcaaaaaac
tatgacaaagttgaaaagttatttcaaaggtgcttgatgaaggtactacacattgaccta
tggaagtgctacctgtcctatgtcagagaaaccaaaggaaagctgcccagctacaaagaa
aaaatggcacaggcgtatgatttcgcactggacaaaattggaatggagatcatgtcatac
cagatctgggtggactacatcaacttcttaaaaggagttgaggctgtgggttcatacgca
gagaaccagcgcatcactgctgtgcggcgagtttaccagaggggctgcgtcaaccccatg
atcaacattgagcaactgtggcgggactacagtaaatatgaagagggcatcaatgtgcac
cttgccaagaagatgattgaggatcgtagcagggactacatgaatgccaggagggtggct
aaggagtatgagaccgtgatgaaaggcctggacaggaacgccccctcagtgcctccccag
aactcccctcaggaggcccagcaggtggagatgtggaagaagtacatccagtgggagaaa
agcaacccgctgcgcactgaagaccagacgctcattacaaaaagagttatgtttgcatat
gagcagtgcctgttggtcctgggccatcaccccgatgtgtggtatgaagctgcccagtac
ctggaacagtccagcaagctgttggcagagaaaggagacatgaacaacgccaagctgttc
agcgatgaggctgccaacatctacgagcgtgccataggaaccctgctgaagaagaacatg
ctgctctactttgcctttgctgactacgaagagagtcgaatgaagtacgagaagacacac
agcatatataaccgtctgctgaccatagaagacattgatccaacattggtttacattcag
tacatgaagtttgccaggagggcagagggaatcaagcatggccgcaccgtttttaagaaa
gccagagaggatcttcgcacacggcaccacgtctatgtgaccgccgcactgatggaatac
tactgcagcaaggataaatctgtggcctttaagatatttgagcttggtttgaagaaatat
ggagacataccagagtacatcctcgcctacatcgattacctctctcatcttaatgaggac
aacaacactagggtgctgtttgagcgggtgctgacctcaggcagcctgtcgcctgagaag
tctggggagatctgggcccgcttccttgcctttgagagtaacattggagacctggccagt
atcctgaaggtggagaggaggcgattcacagctttcaaggatgaatatgagggcaaggag
actgcattactggtggacagatacaagttcatggatctgtacccctgctctaccagcgag
ctgaaggcccttgggtacaaggatgtgtctcgtgccaaactggcagctctgctcccggag
actgtggtgacgccctcgactcctgcgcagaaagaagagggcgaccgtaagcctgagtac
cccaaacccgacactaaccagatgatccccttccagcctcgccacctggcccctccagga
ctgcaccctgtcccaggcggtgtgttccctgtgcctccaactgcagtgctcctcatgaag
ctgctgccccctccagcctgtttcatgggtccttttgtgcaggtggacgagctgatcgag
aacttcagaagatgcacactaccagaaactgtcgatgctgctgtcgagctgatcactggc
cgacagccagagctgaccagcgagggcaacgggccgctggagaaccacgccatggccaac
aagtccttgaagaggcccaacgccgactcagacgaagaggatgacaagggcgccgtggcc
ccgcccgtccacgacatctacagggctcggcagcagaagaggattcgatga
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