Clupea harengus (Atlantic herring): 105889295
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Entry
105889295 CDS
T09045
Symbol
smarcd3b
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3b isoform X9
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
105889295 (smarcd3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
char03021
]
105889295 (smarcd3b)
03036 Chromosome and associated proteins [BR:
char03036
]
105889295 (smarcd3b)
Transcription machinery [BR:
char03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
105889295 (smarcd3b)
Chromosome and associated proteins [BR:
char03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
105889295 (smarcd3b)
PBAF complex
105889295 (smarcd3b)
GBAF(ncBAF) complex
105889295 (smarcd3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
Motif
Other DBs
NCBI-GeneID:
105889295
NCBI-ProteinID:
XP_012670542
Ensembl:
ENSCHAG00000025492
UniProt:
A0A6P3VFV9
LinkDB
All DBs
Position
17:complement(8177796..8221601)
Genome browser
AA seq
506 aa
AA seq
DB search
MATEESAGGARKATKSKLFEFLVHGVRPGMPSGARMPHQGAPMGPPGPPYGGSPTVRPGL
PSPGMEPSRKRPAASQQVQQQPAVQNRARKKPVGFPGANEMPARQMDMRDAQSDPTLGSN
AKRRKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEALKRPMKQKRKL
RLYISNTFNPAKPDADDSDGSIASWELRVEGKLLDDPGKQKRKFSSFFKSLVIELDKDLY
GPDNHLVEWHRTPTTQETDGFQVKRPGDVSVRCTLLLMLDYQPPQFKLDPRLARLLGIHT
QTRSCIIQALWQYVKTNKLQDSHDKEYINCDKYFQQIFDCPRLKFSEIPQRLTNLLLPPD
PIVINHVISVDPNDQKKTACYDIDVEVEDPLKAQMSSFLLSTANQQEIASLDNKIHETIE
SINQLKIQRDFMLSFSRDPKGYIQDWLKSQSRDLKLMTDVVGNPEEERRAEFYHEPWTQE
AVSRYFYSKIQQRRQELEQALAIRNT
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggccactgaggagtcggctggaggagctcgcaaagccaccaagagcaaactgtttgag
ttcctcgtccatggagtgcgtcctggaatgccatctggagcacggatgccccaccagggg
gcaccgatggggcctccaggccctccgtacgggggcagccctacagtgcgacccggtctg
cctagcccggggatggaacccagccgtaagcggcccgccgcctctcagcaggtccaacag
caacctgctgtccagaacagagccaggaagaagccagtgggattccccggagccaatgag
atgccagcgaggcagatggacatgagagatgcccaatcagatcccacgctcggatcaaac
gccaagaggaggaaaatggctgacaagattcttccacaaaggattcgggagctggttcct
gagtcccaggcttatatggatctgttggcctttgaacgcaaactggatcaaaccatcatg
cgcaaacgggtggatatccaggaggccctgaaaagacctatgaagcaaaagagaaaactg
cgactttatatctcgaacaccttcaaccccgccaagcctgatgccgatgattctgacggg
agtattgcatcatgggagctgagggtggagggcaagctgctagatgaccctgggaaacag
aagaggaagttctcgtcgttctttaaaagcctggtcattgagctggacaaagacctgtat
ggtccagacaaccacctggtggagtggcatcgcactcccaccactcaggagacggacggc
ttccaggtgaagaggccgggggacgtcagcgtacgctgcaccctgctgctgatgctggac
taccagcctccccagtttaagctggacccgcggcttgcccgtctgctgggcatccacacg
cagacccgctcctgcatcatccaggccctctggcagtacgtcaagaccaacaagctccag
gactcccatgacaaggagtacatcaactgtgacaagtactttcagcagatatttgactgc
cctcgactcaagttctcagagattccccagcgccttaccaatctgctgctgccccctgac
cccatcgtcatcaaccacgtaatcagtgtggaccctaatgaccagaagaagacggcgtgt
tacgacattgatgtggaggtggaggaccccctgaaggcccagatgagcagcttcctcctc
tccacagccaatcagcaggagatcgcctcccttgacaacaagatccacgagaccattgag
tccatcaaccagctgaagatccagagggacttcatgctgagcttctccagggaccccaaa
ggctacatccaggactggctcaagtcccagagcagagacctcaagcttatgactgatgtg
gtgggtaacccagaggaggagaggagggcggagttctaccatgagccgtggacacaggag
gctgtgagccgttacttttactctaagattcagcagcggagacaggagctggaacaggca
ctggccataaggaacacctaa
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