Clupea harengus (Atlantic herring): 105889319
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Entry
105889319 CDS
T09045
Symbol
trpc1
Name
(RefSeq) short transient receptor potential channel 1
KO
K04964
transient receptor potential cation channel subfamily C member 1
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
char04040
]
105889319 (trpc1)
Ion channels [BR:
char04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
105889319 (trpc1)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRP_2
Ion_trans
Ank_2
Ank_4
MTR4-like_stalk
LHD_TRPY1
TALPID3
Motif
Other DBs
NCBI-GeneID:
105889319
NCBI-ProteinID:
XP_012670569
Ensembl:
ENSCHAG00000025709
UniProt:
A0A6P3VFX3
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Position
17:complement(11027749..11047211)
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AA seq
806 aa
AA seq
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MVKWSLLPSGMHISVLPYSLSVVMAALYQGTDVSSPDKYLALKDVREVKEETTLDEKLFL
LACEKGDYYMVKKLLEEKAHGELNINCVDVLGRDAVTITIENENLDILQLLLEHGCQATD
ALLVAIDSEVVGAVDILLNHRPRRASKPSMAKLMQRIQNPEYSTTMDVAPVILAAHRNNY
EILTMLLKQDISLPRPHAVGCECTLCNAKNKKDSLRHSRFRLDIYRCLSSPSLIMLTEED
PILRAFELSADLRELSLVEVEFRNDYDELAKQCKMFAKDLLAQARNSRELEVILNHTCSE
DHMDKRGLMEERMNLSRLKLAIKYNQKEFVAQSNCQQFLNTVWFGEMASYRRKHTCLKMA
SVLSVTLLWPLLSVCYLFGPRSRVGQVIHTPFIKFIIHSASYFTFLLLLNLYSLVYNEDT
KNTMGPALEMIDYLLILWIVGMVWSDVKRLWYCGLEDFLEESRNQLSFVMNSLYLATFAL
KVVAHSKFKDKVDTERKNWDAFHPILVAEGLFAVANVLSYLRLFFMYTTSSILGPLQISM
GQMLQEFGKFLGLFLLVLISFTIGLTQLYGKDQKEPAKNQTEDCEGIFCSQQSNDAFHTF
MGTCYALFWYIFSLAHVSLFVTRISYTEELRSFVGALIVGTYNIVVVIVLTKLLVAMLHK
SFRQIANHEDKEWKFARAKLWLSYFDDKCTLPPPFNILPSPKTLCYLVTSMSKWVCSHTS
TGKVKRQNSLKEWRNLKQKRDENYQKIMCCLVHRYLTSTRQKMQSTDQATVENLNDLRQD
LSKFRNEMRDLLGFRTSKYAMFYPRS
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atggttaaatggtcgcttcttcctagtgggatgcacatcagtgttttaccctactcgctt
tccgtcgtaatggctgctctatatcagggcacggacgtgtcctctccagataagtaccta
gcgttgaaggacgtgagggaggtaaaagaggagacgacgctggacgagaagcttttctta
ctggcctgtgagaagggtgattactatatggtgaagaagcttctggaagagaaggcgcat
ggtgagctgaacatcaactgtgtggatgtgttgggccgggatgctgtcaccatcactatt
gagaatgagaacctggacatcctccagctgctgttggagcatggatgtcaggcaacagat
gccttgctggtggccatcgactcggaggtggtaggagctgtggacattctcctcaaccat
cggcccagaagggcctcgaagccttccatggccaaactgatgcagcgcattcagaacccg
gaatattccaccaccatggacgtggcaccagtgattctggctgcccacaggaacaactat
gagatcctgaccatgctgctgaagcaggacatttctctgccacgaccacacgccgtgggc
tgcgaatgcacgctctgcaacgccaaaaacaagaaggacagcctgcgccattccaggttc
cgtctggacatctaccggtgcctgtcgagtccgtctctcatcatgttgaccgaggaggac
cccatcctgcgggcctttgagctcagcgctgacctgcgcgagctcagcctggtggaggtg
gagttcaggaacgactatgatgaactggccaagcagtgcaagatgttcgccaaggacctg
cttgcccaggccaggaactctcgagagctggaggtcatcctgaaccacacgtgcagtgag
gaccacatggacaagcgtggcctgatggaggaacgcatgaacctcagccgcctcaaactg
gccatcaagtacaaccagaaggagtttgtggcgcagtccaactgccagcagttcctcaac
acagtgtggtttggcgaaatggccagctaccggcgcaagcacacgtgcctgaagatggcg
tcggtgctgagcgtgacgctgctgtggcctctgctgtcagtgtgctacctgtttggtccg
cgctcgcgcgtcggtcaggtcatccacacgcccttcatcaagttcatcatccacagcgcc
tcctacttcaccttcctgctgctgctcaacctctactcgctggtctacaacgaggacacc
aagaacaccatggggcccgcgctggagatgatcgactacctgctcatcctgtggattgtg
ggcatggtgtggtcggatgtcaagcgcctgtggtactgtgggctggaggacttcctggag
gagtcgcgcaaccagctgagcttcgtcatgaactccctgtacctggccacctttgcactg
aaagtggtggcccacagcaagtttaaggataaggtggacacagagaggaagaactgggac
gccttccaccccatcctggtggccgagggcctgtttgccgttgccaatgtgctcagctac
ctacgcctcttcttcatgtacaccaccagctccatcctggggccgctgcagatctctatg
ggtcagatgttgcaagagtttggcaagttcctgggcctgttcttgctggtcctcatctcc
ttcaccattggtctcactcagctctacggaaaagaccagaaggagcccgccaagaaccag
acagaggactgtgagggcatcttctgctcgcagcagagcaacgatgccttccacacgttc
atgggcacatgctatgccctcttctggtacatcttttcactagcacacgtatctctgttt
gtcacgcggatcagctacacggaggagctgcgctcgtttgtgggtgccctcatcgtgggc
acatacaacatcgtggtggtcatcgtcctcaccaagcttctggtggccatgctacacaag
agcttcagacagatcgcgaaccatgaggacaaggagtggaagtttgctcgtgccaagctg
tggctcagttactttgatgacaagtgcaccctgcccccacccttcaacatccttccctcc
ccaaagaccctatgctacttggtgaccagcatgagcaagtgggtctgctcacatacctcc
actggcaaagtgaaacgacagaacagcctcaaggagtggagaaacctaaagcagaagaga
gatgagaactaccagaagatcatgtgctgcctggttcaccgatacctgacctccacccgg
cagaagatgcagagcaccgaccaggcaaccgtggagaacctcaacgacctgcgtcaggac
ctgtctaagttccgcaacgagatgagggacctcctgggctttcgcacctccaaatatgct
atgttctatcccagaagctaa
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