Clupea harengus (Atlantic herring): 105889354
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Entry
105889354 CDS
T09045
Symbol
puf60b
Name
(RefSeq) poly(U)-binding-splicing factor PUF60-B isoform X3
KO
K12838
poly(U)-binding-splicing factor PUF60
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105889354 (puf60b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
char03041
]
105889354 (puf60b)
Spliceosome [BR:
char03041
]
Complex A
U2 snRNP components
U2 related factors
105889354 (puf60b)
Complex B
105889354 (puf60b)
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GFIT
Motif
Pfam:
RRM_1
RRM_7
Motif
Other DBs
NCBI-GeneID:
105889354
NCBI-ProteinID:
XP_012670618
Ensembl:
ENSCHAG00000005982
UniProt:
A0A6P3VFZ2
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Position
17:complement(8910653..8923004)
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AA seq
543 aa
AA seq
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MAVTLETARGNTLMMENGQSTGSKLGLPPLTPEQQEALQRAKKYAMEQSIKSVLVKQTIA
HQQQQLTNLQMAAVTMGFGDPLSPLQSVAAQRQRALAIMCRVYVGSIYYELGEDTIRQAF
APFGPIKSIDMSWDSVTMKHKGFAFVEYEIPEAAQLALEQMNSVMLGGRNIKVGRPSNIG
QAQPIIDQLAEEARAYNRIYVASVHPDLSDDDIKSVFEAFGKIKSCMLARDPNTGRHKSY
GFIEYEKPQSALDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPTTPGGLPPAAAVAAAAA
TAKITAQEAVAGASVLGSLASPAQILSQQMGLPQAVLAAQAPGLITGVTPARPTLPVVPQ
VGLVNPVLATPPVTSVLAAVATATAASLPAEAKKDAEEARSGDQDDQPQQDGAGQENLSD
QEHLSISGSSARHMVMQKLLRKQESSVMVLRNMVGPEDIDDDLEGEVTEECGKFGAVNRV
IIYQERQGEEDDAEIIVKIFVEFSEAAEMNKAIQALNNRWFAGRKVVAEVYEYERFNNSD
LSA
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atggcggtaacattggagactgcgagaggcaacacgctgatgatggagaatggacagagc
acgggctctaaacttgggctgccgcccctcacacccgaacaacaggaggcgctgcagagg
gcaaagaaatatgccatggagcagagcattaagagtgtgctggtgaagcagaccatagcc
catcagcagcaacagctaaccaacctgcagatggcagcagtgacaatgggctttggagat
cctctctcacctttgcaatcggtggcagcacagcggcagcgggccctggccatcatgtgc
cgcgtctacgttggctccatctactacgagctgggcgaggacaccatccggcaagccttc
gcaccctttggccccatcaaaagcattgacatgtcctgggactcagtcaccatgaaacac
aagggctttgcctttgttgagtatgagatccccgaggcggctcagctcgctctggagcag
atgaactcggtcatgttggggggccgcaacatcaaggtggggcggccaagtaacatcggc
caggcgcagcccatcattgaccagctggcagaggaggcgcgtgcctataaccgtatctac
gtggcgtctgtgcacccggacctttcggacgacgacatcaagagtgtcttcgaggccttt
ggcaaaatcaagagctgcatgctggcacgggaccccaataccggccgccacaagagctac
ggcttcatcgaatatgagaaaccacagtcggccctggatgctgtgtcctccatgaatctg
tttgacttgggtgggcagtatctgcgagtaggcaaggctgtgaccccgcccatgccccta
ttgacgccaaccaccccgggagggttgccccctgctgcagctgtggccgctgctgctgcc
acagccaagatcaccgctcaggaggccgtggcaggagcatccgtattaggttctctggca
agccctgcccagatcctcagccaacagatgggactcccacaggctgtgctggcagcccag
gcccccggcctcatcacaggagtgacccctgcccggcctactctgcctgtagtgccccag
gtggggctggtaaacccggtacttgcaactccgcctgtcacgtcagtactcgctgctgtt
gccacagcgacagcggccagtctacccgcagaggcgaagaaggacgcagaggaggcacgt
agtggggatcaggacgaccaaccgcagcaggatggggctggacaggagaacttgagcgac
caggagcacctgagcatttctggaagcagtgcacgacatatggtcatgcagaagctgctt
cgcaagcaagagtcgagcgttatggtcctgcggaacatggtgggcccagaggacattgac
gacgacctggagggagaggtaacggaagagtgtggcaagtttggcgctgttaaccgggtc
atcatctaccaggagcggcaaggcgaggaagatgacgccgagatcatcgtcaagatcttt
gtggagttctcagaggcggccgaaatgaacaaggccattcaagcccttaacaaccgttgg
tttgcaggtcgcaaggtggttgctgaggtctacgaatatgagcggttcaacaatagtgac
ctgtccgcataa
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