Clupea harengus (Atlantic herring): 105889355
Help
Entry
105889355 CDS
T09045
Symbol
sbno1
Name
(RefSeq) protein strawberry notch homolog 1 isoform X1
KO
K26273
protein strawberry notch
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
char03036
]
105889355 (sbno1)
Chromosome and associated proteins [BR:
char03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
105889355 (sbno1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_34
Helicase_C_4
ResIII
Helicase_C
Motif
Other DBs
NCBI-GeneID:
105889355
NCBI-ProteinID:
XP_012670622
Ensembl:
ENSCHAG00000022142
UniProt:
A0A6P3VFG7
LinkDB
All DBs
Position
12:complement(15539367..15558167)
Genome browser
AA seq
1396 aa
AA seq
DB search
MMDPGQDLLLAALSESGICPNDLFDLDPQDPVPQQSVSVSALDGVSLAAEAAGIVRLEPA
QHPTPTITIRQKPQPSTTTFVLNQLNQLPSLGTIVVTKPGSGSTARQTITVTKVVHARGM
VSATHAPVCSVVPPNREQVKLKDLLKQGNLKTSSLGELMKLKPPADIAPPVATATAASTK
IIVVSSKMMNRAVELNNGVKKEVTSKDVARIWVNEDLKMRSFSPTNIPHIKDEEEPEEEE
EEELGHAETYAEYMPMKLKTGLRHPDPVVETSSLSSVKPPDVWYRMIVPEETIDRGWLSA
LQLEAITYASQQHETFLPNQDRAAYLIGDGAGVGKGRTIAGIIYENYLLGRKRSLWFSVS
NDLKYDAERDLRDIGAKNISVHSLNKFKYGKISSKHNGSVKKGVIFATYSSLIGESQSGG
KYKTRFKQLLHWCGDDFDGCIVFDECHKAKNVCPIGSSKPTKTGLAVLELQNKLPKARVV
YASATGASEPRNMAYMNRLGIWGEGTPFKEFTNFIQAVERRGVGAMEIVAMDMKLRGMYI
ARQLSFQGVTFKIEEVPLSNDYIKMYNKAVRLWVSAREKFQQAANLMDAEQRMKKSMWGQ
FWSAHQRFFKYLCIASKVRRVVQLARDEVKNGKCVVIGLQSTGEARTLEALEEGGGELND
FVSTAKGVFQSLVEKHFPAPDRQKLFSLLGIDLPSKKPPPANNNAQDQKGTKRKGQEVKK
ETKRKRRSGGLSGSSSSEESQSDVSDQDAESNDSFKSVSSGEEDDFNPFRDESSQDEEDD
PWLIRKDSKKSKEKKGKKKRKSIDPDSIQSALLASGLGSTRLTFTTPVAKVPAVAAPAAK
TESDGCVTSQDAVEDAQQMKRHLLDDLEKLAESLPPNTLDELIDELGGPENVAEMTGRKG
RVVSNDDGSISYESRSELDVPVEILNLTEKQRFMDGEKNIAIISEAASSGISLQADRRVK
NQRRRVHMTLELPWSADRAIQQFGRTHRSNQVTAPEYVFLISELAGEQRFASIVAKRLES
LGALTHGDRRATETRDLSRFNFDNKYGRNALEIVMKSIVNLDSPLVSPPSEFEGDFFKEI
RSGLIGVGLINIEDRSRILTLDKDYNNIGKFLNRILGMAVQQQNSLFQYFADTLTAVISN
AKKNGRYDMGILDLGSGDEKVRKVNMKKFLTPGYSTSGHVELYTVSVERGMSWEDATHIW
AEHNGTDDGFYVQVRNNKKTALLVTEVNSKKKLFLVYRPNTGKQLKQETYADIRKKCKKV
LSDDAKQHWIDQYNSSAEICAHAFWRGNCRKASAGMQCEIGLRCRTYFVLCGSVLSVWTK
VEGVLASVSGTNVKMQIVRLRTEDGHRIVGLLIPANCVSPLTNLLSSSDQSQQLAVQQQQ
MWQQLHPQSLSHSANT
NT seq
4191 nt
NT seq
+upstream
nt +downstream
nt
atgatggatcctggacaggatttgcttttggcggccttgagcgaaagcggaatctgccca
aatgacctttttgacctcgacccacaggaccctgtgcctcaacagtcagtatccgtcagc
gcgctggatggagttagtttggcagccgaggctgctgggatagtccggctggagcctgct
caacaccccacccccacaatcacaatcagacagaagcctcagccatcgaccacaacgttt
gtcttaaaccagctcaaccagctgccctcgctgggcaccattgtggtcaccaaacccggc
tcgggctccacggctcggcagaccatcacagtgacgaaggtggtgcatgcgagggggatg
gtctcggctacgcatgcgcccgtctgctctgtggtgcctcccaaccgggagcaggtgaag
ctgaaggacctgctgaagcagggcaacctgaagaccagcagcctgggagaactcatgaag
ctcaaaccgccagcggacatcgccccgccggttgccacagcgacagctgcgagcacaaaa
ataattgtggtctcttccaagatgatgaatagagcagtggagttaaacaacggtgtgaag
aaagaggtgaccagcaaagacgtggccagaatctgggtgaacgaggacctgaagatgcgt
agcttttctcccaccaatataccgcacattaaagatgaagaggagccagaggaggaggaa
gaggaggaattgggccatgcggagacgtatgcggaatacatgccgatgaaattgaagaca
ggcctgcggcaccctgacccggtggtggagaccagctcgctgtccagcgtgaaacctccg
gacgtgtggtaccgcatgatcgtccctgaggagaccattgaccgcggctggctgtccgct
ctgcaactggaagccatcacatatgccagccagcaacacgaaacattccttcccaaccaa
gaccgagcggcctatctgataggggatggggctggagttgggaaagggagaaccatcgct
gggataatttacgagaactacctgctggggaggaaacgctccctctggttcagcgtctcc
aatgacctgaagtacgacgcagagagagatctgagggacattggcgccaagaacatctca
gtccactcgctgaacaagtttaaatacgggaagatttcctcaaaacacaacggcagtgtg
aagaaaggtgtgatttttgccacgtactcttccctcatcggagaaagccagtcaggtggg
aagtacaagaccaggtttaagcagctgctgcattggtgtggtgatgacttcgacggatgt
attgtatttgatgaatgccacaaagccaaaaatgtttgccccattgggtcttcaaaaccc
acaaagaccggtttggctgtgctggagcttcagaacaaattacccaaagcccgggtggtg
tatgctagcgccacaggtgcgtctgaaccgcggaacatggcctacatgaaccgtcttggc
atctggggtgaaggaacgccctttaaggagttcaccaacttcattcaagcagtggagagg
agaggtgtcggtgccatggagattgttgccatggatatgaagttgagaggaatgtacatt
gcccggcagctgagctttcagggtgtgacgtttaagattgaagaagtccctttatccaat
gactacatcaagatgtacaacaaggcagtacgactgtgggtgagcgcccgggagaagttc
cagcaagctgccaacctcatggacgcggagcagcgcatgaagaagtccatgtggggccag
ttctggtctgcacaccagcgcttcttcaagtacctctgcatcgcctcaaaggtgcgccga
gtcgtgcagctcgcccgtgacgaggtcaagaatggaaagtgtgtggtgatcggtcttcag
tcgacaggagaggcccgaacactggaggctttggaggagggaggaggagagctcaacgac
tttgtgtccactgctaagggtgtgttccagtctctagtggagaagcactttcctgctccg
gacagacagaagctctttagcctgctgggtattgatctgccctccaagaaacccccgcca
gccaacaacaatgcccaggaccagaagggcaccaagagaaaaggtcaagaggtcaagaag
gagacgaagagaaagcggcggtcgggagggctgtcaggaagcagcagctcagaggagagc
caatcagacgtgtcggaccaggacgcagagagcaacgacagcttcaaatcggtcagctct
ggggaggaggatgacttcaaccccttcagggacgagtccagtcaggatgaggaggatgat
ccttggctcatccggaaggactccaagaaaagcaaggagaaaaagggcaagaagaagagg
aagagcatcgaccccgactccattcaaagtgccttgctggcgtcagggctgggctccacc
aggctgaccttcaccacacccgtcgccaaagtgcccgcagtcgccgccccagcagctaaa
acggagagtgatggctgtgtgaccagccaggatgcagtggaggatgcccagcagatgaag
cgccacctgctggatgacttggagaagctagccgagtcgctgccccccaacacgctggac
gagctgatcgacgagcttgggggcccggagaatgttgctgagatgacgggacgcaaaggc
agggtggtcagtaatgacgacggcagcatctcctacgagtcgcgctccgagctggatgtt
cccgtggagatcctgaacctgacagagaagcagcgcttcatggatggagagaagaatatt
gccatcatctcggaggcggccagctctgggatctctctgcaggccgaccgcagggtgaag
aaccagaggaggagagtgcacatgaccctggagctgccctggagcgcagaccgggccatc
cagcagttcggccgaacacacagatccaatcaggtcacagcgccagaatatgtgttcctc
atctctgagctggcaggagaacagcgattcgcctcgattgttgccaaaagactggaaagc
ttgggtgcgctgacccatggggacagaagagcaacagagacccgagacttgagccggttc
aactttgacaacaaatatggaagaaacgcgctggagatcgtcatgaagtccatcgtcaac
ttggactctcccctggtctcccctccttcagaatttgaaggggatttctttaaagaaatc
cgcagtggcttaataggcgtgggactgatcaacatcgaggatcggtcccgaatcctgacg
ttggacaaagattataacaacattgggaagttccttaaccggattcttggtatggcggtc
caacagcagaattctctcttccagtacttcgctgacacactaacagctgtcatctcgaat
gccaagaaaaatggacgttatgacatgggaattctggatttgggctcaggggatgagaag
gtgaggaaggtcaacatgaagaagttcctgacccctggatactcaacctcaggacacgtg
gagttgtacactgtgagcgtagagagagggatgtcatgggaagatgccacccatatctgg
gcagaacacaatggcactgatgatggcttctatgtgcaggtgaggaacaataagaaaact
gccctcctggtcacggaggtcaacagcaagaaaaagctcttccttgtctacaggccaaac
acagggaagcaacttaaacaagagacgtacgccgatatccggaaaaagtgtaaaaaggtg
ctgtcagatgatgccaagcaacactggatagatcagtacaactcctcagcagaaatctgt
gctcatgctttctggcgcggaaactgtaggaaggcatcggcggggatgcagtgtgagatc
gggctgcgctgcaggacctactttgttctgtgcggttccgtgctcagcgtgtggaccaaa
gtggagggagtgctggcctccgtcagtggaaccaacgtcaaaatgcagatcgttcgtttg
agaacggaggacgggcacagaatcgttggcttgttgatcccagccaactgcgtgtcccct
ctgaccaacctcttgtcgtcgtcggaccagtcgcagcagctggccgtccagcaacagcag
atgtggcagcagctgcaccctcagagcctaagccactccgccaacacatag
DBGET
integrated database retrieval system
