Clupea harengus (Atlantic herring): 105889503 Help Entry 105889503         CDS       T09045                                  Symbol copa Name (RefSeq) coatomer subunit alpha   KO K05236   coatomer subunit alpha Organism char  Clupea harengus (Atlantic herring) Brite KEGG Orthology (KO) [BR:char00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:char04131]     105889503 (copa)   09183 Protein families: signaling and cellular processes    04147 Exosome [BR:char04147]     105889503 (copa) Membrane trafficking [BR:char04131]  Endoplasmic reticulum (ER) - Golgi transport   Retrieval pathways    Coat protein complex I (COP-I)     105889503 (copa) Exosome [BR:char04147]  Exosomal proteins   Exosomal proteins of other body fluids (saliva and urine)    105889503 (copa)   Exosomal proteins of bladder cancer cells    105889503 (copa) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  COPI_C B-prop_COPA_B_2nd WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz WDR55 Beta-prop_EML_2 TPR_COPA_B Beta-prop_WDR90_POC16_2nd EIF3I Beta-prop_TEP1_2nd Beta-prop_EML Beta-prop_CAF1B_HIR1 Beta-prop_EIPR1 Beta-prop_TEP1_C Beta-prop_WDR75_1st WD40_RFWD3 ANAPC4_WD40 WD40_MABP1-WDR62_2nd WD40_MABP1-WDR62_1st Beta-prop_SCAP Beta-prop_SPT8 Beta-prop_DCAF4 Beta-prop_IFT140_1st NBCH_WD40 Beta-prop_RIG_2nd Motif Other DBs NCBI-GeneID:  105889503 NCBI-ProteinID:  XP_012670810 Ensembl:  ENSCHAG00000018139 UniProt:  A0A6P3VGJ0 LinkDB All DBs Position 22:15433269..15448302 Genome browser AA seq 1223 aa AA seqDB search MLTKFETKSARVKGLSFHPKRPWILASLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFH KQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIW NWQSRTCVCVLTGHNHYVMCAQFHPSEDLVVSASLDQTVRVWDISGLRKKNLSPGAVETE VRGLTGVDLFGASDAVVKHVLEGHDRGVNWAAFHPTMPLIVSGADDRQVKIWRMNESKAW ELDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLGAH PNLNLFAAGHDSGMLVFKLERERPAYAVYGNMLYYVKDRFLRQLDFNSSKDTAVMQLRSG SKFPVFSMSYNPAENAVLLCTRATNLENSTYDLYSIPRESDSQNPDAPEGKRSSGLTAVW VARNRFAVLDRMHSLLIKNLKNEIVKKVQVPSCEEIFYAGTGSLLLRDPDGVTLFDVQQK RSLATVKIAKVKYVVWSTDTSHVALLAKHAIMICNRKLESLCNIHENIRVKSGAWDESGV FIYTTSNHIKYALTSGDHGIIRTLDLPIYVTRVRGNSVYCLDRECRPRVLNIDPTEYRFK LALVSRKYEEVLHMVRNAKLVGQSIIAYLQKKGYPEVALHFVKDEKTRFSLALECGNIEV ALEAAKALDERSCWERLGEAALLQGHHQVVEMCYQRTKNFDKLTFLYLITGNLAKLRKMM KIAEIRKDMSGHYQGALYLGDVSERVRILKNCGQKSLAYLTAATHGLDEEAEALKETFDL EKEVIPEVDSNAQLLQPPPPINPLDTNWPLLTVSKGFFEGAIAAKGKAGQMAADPDMEAP GGEGWGEDAELHLDEDGFADAQDVLGDEAGSRKEEGGGWDVEEDLDLPPELELAAGAGGG DEEGFFVPPTKGMSPAQMWCNNSQLVVDHLLAGSFETAMRLLHDQVGVVCFEPYKQLFMQ TLSRGRTAYLGLPSLPCLRGHPLRNWKDAGVKGGLPAVGLRLADLISRLQQCYQLTTAGR FEEAVERFRVIMLSVPLLVVDNKQEIAEAQQLITICREYIVGLTMETERKKLPKETLDHQ KRLCEMAAYFTHCNLQPVHMVLVLRTALNLFFKLRNFKTAAGFARRLLELGPKPEVAQQT RKILAACEKTLTDAHQLNYDPHNPFDLCAASYTPLYRGRPVEKCPLSGACYCPTYKGQIC RVTQATEIGKDVIGLRVSPLQFR NT seq 3672 nt NT seq  +upstreamnt  +downstreamnt atgttgaccaaatttgagacaaaatcggcccgtgttaaagggcttagtttccacccgaag agaccatggattcttgccagtttgcacaacggagtcattcaactgtgggattaccgcatg tgcaccttgattgacaaattcgacgagcatgacggtccagtccgagggattgactttcac aagcagcagcccttgtttgtgtctggaggagatgactacaaaatcaaggtatggaactac aaattaaggcgatgtctgttcacactgcttggacacttggattatatccggactaccttt ttccaccatgagtatccctggattttgagtgcatcagatgaccagaccatccgcatctgg aattggcagtctcgtacttgtgtctgtgtcttgacgggtcacaatcactatgtgatgtgt gctcagttccacccctcagaggacctggtggtgtcagccagcctggatcagactgtgcgc gtgtgggatatctctggtttgaggaagaagaacctctccccaggcgccgtggagacagaa gtgcgagggctcacaggagtggatttgtttggggcctctgatgctgtagtgaaacacgtt cttgagggtcacgaccgcggggttaactgggccgccttccatcccaccatgcccctcatc gtctcaggagcggatgaccgccaggtcaagatctggaggatgaatgagtccaaagcctgg gagctggacacctgcaggggacattacaacaatgtgtcctgtgccgtcttccacccccgc caggagctaatcctgtccaactctgaggacaagagcatccgcgtgtgggacatgtccaag aggaccggtgtgcagaccttccgcagggaccacgaccgcttctgggtgttgggggctcac cctaacctcaacctctttgctgcagggcatgacagtgggatgctggtgtttaagctggag cgggagaggccggcctacgctgtgtacggcaacatgctgtactacgtgaaggaccgcttc ctgcgccagctggacttcaacagcagcaaagacacggctgtcatgcagttgcgcagtggg tccaagttccccgtgttcagcatgtcttacaacccggccgaaaatgctgttctgctgtgt actagagccactaatctggagaacagcacatacgacctttactccatcccacgtgagagt gactcccaaaaccctgatgctcctgaaggcaagcgctcttctggtctgacggctgtgtgg gtagccaggaacagatttgccgttttggaccgcatgcactcgctgttgatcaagaacctg aagaatgagatcgtgaagaaggtgcaggttccgagctgcgaggagatcttttacgcgggg acgggctctctgctgctgcgcgaccctgacggagtcacgctgttcgacgtgcagcagaaa cgctccctcgccaccgtcaagatcgccaaggtcaagtacgtggtgtggagcaccgacacc agccacgtggccctgctagccaaacacgccatcatgatctgcaacaggaagctggagagc ctgtgcaacatccatgagaacatccgtgtgaagagcggcgcctgggacgagagcggcgtc ttcatctacaccacctccaaccacatcaaatacgccctcacctcaggtgatcacggcatc atccgtacgctggaccttcccatctacgtgacgcgtgtgcggggaaacagcgtgtactgc ctggaccgcgagtgtcgccctcgtgtgctcaacatcgaccccaccgagtatcgcttcaaa ctggcgctggtcagccgcaaatacgaggaggtgttgcacatggtacgtaatgctaagctg gtgggccagtccatcattgcctacctgcagaagaagggctatccggaggtggcgctgcac ttcgtgaaggacgagaagacccgcttcagcctggctctggagtgtggcaacattgaggtg gcgctggaggctgctaaggccctagatgagcgcagctgctgggagcgtctgggagaggcc gcactgctgcagggtcaccaccaggtggtggagatgtgctaccagaggaccaagaacttt gacaagctcaccttcctctaccttatcactggcaacctggccaagcttcgcaagatgatg aagatcgctgagatcaggaaggacatgagtggacactaccagggagccctgtacctggga gacgtcagtgagagagtgcgcatcctgaagaactgtggacagaagtctctggcctacctg actgccgccacccatggcctggatgaggaggcggaggccctgaaggagacctttgacctt gagaaggaagtgattccagaggtggactccaatgcccagctgttgcagccccctcctccc atcaaccccttggacaccaactggcccctgctcactgtctccaagggcttctttgaggga gccatcgctgccaaaggtaaagctggtcagatggctgcagacccggacatggaggcccca ggaggagagggctggggagaagatgccgaactgcacctggatgaagatggctttgctgat gcccaggatgtgttgggtgatgaggcaggcagcaggaaggaggagggaggcggttgggat gtagaggaggatctagacttgcctccagagctggagctggctgctggtgcaggaggcgga gatgaggagggcttctttgttccgcccaccaagggcatgagccccgcccagatgtggtgc aacaactcccagctggttgtggaccaccttctggcagggtccttcgagaccgccatgagg ctgctgcacgaccaggtgggtgtggtgtgcttcgagccctacaagcagctcttcatgcag acgctgtcgcgcggccgcaccgcctacctgggcctgccctcgctgccctgcctgcgcggc cacccgctgcgcaactggaaggacgcgggcgtcaagggtggccttccggccgtgggcttg cgcctggccgacctcatctcccgcctgcagcaatgctaccagctcaccacggcggggcgc ttcgaggaggccgttgagcgcttccgcgtcatcatgctgtccgtaccgctgctggtggtc gacaacaagcaggagatcgcagaggctcagcaacttatcaccatctgcagagagtacatt gttgggctcaccatggaaacggaaaggaagaagcttccaaaagagacccttgaccaccag aagaggctgtgtgagatggcggcgtacttcacgcactgtaacctgcagccagttcacatg gtcctggtgctgcgcacagctctcaacctcttcttcaagctgcgcaacttcaagaccgcg gctggcttcgcacggcgcttgcttgagctgggccccaaaccagaggtggcacaacagaca aggaagatactggctgcgtgtgagaagactctgacagacgcacaccagctgaactacgac ccccacaatccgtttgacctgtgcgccgcctcttacactccgctgtaccgtggtcggcca gtggagaagtgccccctgtcgggagcctgttactgtcccacgtacaaggggcagatctgc agggtcacacaggcaacggagatcggaaaggacgtgattggtctgcgtgtcagccccctg cagttccgttag

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