Clupea harengus (Atlantic herring): 105889601
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Entry
105889601 CDS
T09045
Symbol
runx1
Name
(RefSeq) runt-related transcription factor 1 isoform X2
KO
K08367
runt-related transcription factor 1
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
char00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
105889601 (runx1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
char03000
]
105889601 (runx1)
Transcription factors [BR:
char03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
Runt
105889601 (runx1)
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Gene cluster
GFIT
Motif
Pfam:
Runt
RunxI
Motif
Other DBs
NCBI-GeneID:
105889601
NCBI-ProteinID:
XP_012670941
Ensembl:
ENSCHAG00000012866
UniProt:
A0A6P3VGI6
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Position
16:complement(16988128..17039867)
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AA seq
446 aa
AA seq
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MVFLWDAKYDPAPGRRFTPPSTTLGSGGKMSEGLPLGAQEGSGATLVGKLRMADRSMVEV
LSDHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDIPDGTLVTVMAGNDENYS
AELRNATAALKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYQRAIKITVDGPR
EPRRHRQKLEESVKPGTLAFSEQLRRSAMRCSPNPNVRNTLTTPPFSSPTHTQLADSRQM
QTSPSWSYEQPYPYLSQISTATHHPATPISPSRNSIHCSELTAFSDPRMTLERPFGSLST
IQDGRFSDPRMHYPTGAFPYPPTPVTNAIGIGMSAMTGPTGRYPTYLPPPYPSASSQGQG
GPFQASSSPYHLYYSATAGSYQFSMMTGGGGGERSPPRILPPCTNASTGSTLLHPSLPNQ
SDVVETEGSHSSSPTNMSAEAVWRPY
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atggtgtttctttgggacgcaaaatacgaccctgccccgggtcgccgcttcacccccccc
tccaccacactggggtctggtgggaagatgagcgagggtctccccctcggcgcccaggag
ggcagtggtgccaccctggtgggcaagctccgcatggcggacaggagcatggtggaggtg
ctgtccgaccatccaggggaactggtgcgcacagacagtcccaacttcctgtgctccgtg
ctccccacacactggcgttgtaacaagaccctgcccattgcatttaaggtggtggccttg
ggtgacattccagacggaacactggtgacagtgatggcggggaacgacgagaactactcg
gcggagctgcgcaacgccaccgcagccctcaagaaccaggtggcacgcttcaacgacctg
cgcttcgtcggccgaagtggcagaggtaaaagtttcactctgaccatcacagtgttcacc
aacccgccccaggtggccacctaccagcgcgctatcaagatcacggtggacggaccccga
gaaccgcgccgacacagacagaagctggaggagtcagtgaagcctggcacactggcgttc
tctgaacagctgaggcgtagtgccatgcggtgcagcccgaaccccaacgtccgcaacaca
ctcaccacaccaccgttcagcagtcctacacacacacagctggccgactccaggcagatg
cagacatctccatcctggtcctacgagcagccatacccctacctgagccaaatctccacg
gcaactcatcacccggcgacgcccatctctcccagtcgcaactctatccactgttctgaa
ctgacagcgttcagtgacccccgcatgaccctggaacgacccttcggctcactgtccaca
attcaagatgggcgcttctcagacccacgcatgcactacccgaccggagccttcccatac
cctcctacgccagtcaccaatgccatcggtattggaatgtcagccatgacgggcccaacc
ggccgctaccctacctacttaccaccgccctacccctctgcctcctcccaaggtcaaggt
ggtccattccaggccagctcgtctccctatcatctctactacagcgcaacagctgggtcg
taccaattttccatgatgacagggggaggtgggggggaacggtcacctcctcgcatcctg
cccccctgcacaaatgcctccactggctccaccctcctccacccctccctgcccaatcag
agtgacgttgtggagacggagggaagccacagcagctctcccaccaatatgtcggcagag
gcggtgtggcggccatattga
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