Clupea harengus (Atlantic herring): 105889698
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Entry
105889698 CDS
T09045
Symbol
si:ch73-63e15.2
Name
(RefSeq) protein strawberry notch homolog 2 isoform X1
KO
K26273
protein strawberry notch
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
char03036
]
105889698 (si:ch73-63e15.2)
Chromosome and associated proteins [BR:
char03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
105889698 (si:ch73-63e15.2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_34
Helicase_C_4
ResIII
DEAD
Helicase_C
Motif
Other DBs
NCBI-GeneID:
105889698
NCBI-ProteinID:
XP_012671061
Ensembl:
ENSCHAG00000011978
UniProt:
A0A6P3VGV2
LinkDB
All DBs
Position
10:complement(29734746..29801474)
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AA seq
1408 aa
AA seq
DB search
MPSLSSTPPVMNAENHMRPEGPQLDMGMYSLASPTLGGQSYSCDYPWGFSQQGPLDLQRP
VQSHRQPYHLNSMSDIPMGDSAFHDVDFPSIILHNEDFSQDLSCLDDLSSTSLFSSPADS
LSEYTDAQAFLNNDSLTRVPTLWDINTPAQNQPELNSTRFQGLNSLEDLRASIHTHTPLA
AFQPQRPPTPPENEQEADEEEAEELGHVDTYADYKPSKSTVGISHPDRVVETNTLSSVPP
PDITYTLSIPDPTISSGLLSALQLEAIIYACQQHEVILQNQQRAGYLIGDGAGVGKGRTV
AGIILENYLKGRKRALWFSVSNDLKYDAERDLKDINAPNIPVHALNKIKYGDTATSEGVL
FATYSALIGESQAGGQLRTRLKQILDWCQPDFEGVIVFDECHKAKNATSTKMGKAVLDLQ
NKLPRARVVYASATGASEPKNMIYMSRLGIWGEGTPFRTFDDFLHVIEKRGVGAMEIVAM
DMKVSGMYIARQLSFSGVSFHIEEISLDEDFKLVYNKAAKLWAEALTVFTQAADMLCLRS
RKSLWGQFWSSHQRFFKYLCIAAKVRRLVLLAKKELAAGKCVVIGLQSTGEARTREVLDE
NDGHLDRFVSAAEGVFQSLVHKHFPSEKQREKSAGSKRKRKPRGRQPKYPRQVQECAVVI
QISDASSSDTEAMDSDSNSSPDSLQDNSDDVIFVNQTNGHTAETGKMKASLLTKIAELGK
ELPLNTLDELIDKLGGPEKVSEMTGRKGRVVRHPDGTVGYESRAEQSHTIDQINVKEKDR
FMNGEKLVAIISEAASSGISLQADKRVRNQRRRVHMTLELPWSADRAIQQFGRTHRSNQV
TAPEYVFLISELAGERRFASIVAKRLESLGALTHGDRRASESRDLSKYNFENKYGTKALD
KITKAILGYTESKVAPPKDYPGCDAMFFSDMKQGMMNVGIFCRDPRLGLNTEKDCTITKF
LNRILGLEVHKQNSLFQYFTDNFDYLIAKDKKEGKYDMGILDLAPGNDEIYEEKQEEFLT
VGNPHDGQVVLYKITVDRGMPWEEAFEKSQKLSGSDDGFYLSHKLRGTQPCVLLAEQGRG
HSLIVHKPNIGKQAQLESLDNMRNRYRKVTADEAREIWENQYTFSFKKCSHANWNGKCKK
VEEGQECTQGMRLRQYHMLCGALLRVWKHVADVVADLTGSSILQIVRLKTKQLHKQVGIK
IPESCVLRVREELQQMDGEVKRRRREREELQRQSYIDLLSQLPFPSNPSQLSGLSPFLYT
PPPGAVFPSLSKTPLADMLDSTEGGALGLSDPAEDFSMEPLESQQQQPQQQEKEKDKLSL
EFMDSIQLFDLNLCPPLHSPLPPTPSSPTALTSSSPSFFHEMPSLTLPSAPCNTDVHIDF
REVLNNMFQSGSDRQSVIKLPLQGRDSS
NT seq
4227 nt
NT seq
+upstream
nt +downstream
nt
atgccctccctctcctccacgcctccggtcatgaacgcggagaaccacatgcgccctgag
ggacctcagctggacatgggcatgtacagcctggcttcccccacccttgggggccagtca
tattcctgtgactatccgtggggattctcacagcagggccctctggacctgcagcggccc
gtgcagtcgcacagacagccataccacttgaacagcatgtcggatatacccatgggtgat
tctgcattccatgacgtggacttccccagcatcatacttcacaatgaagacttctctcag
gacctctcttgcttagatgacctatcctccacctctctgttctcctctccagctgactct
ctgtctgagtacaccgatgctcaggccttcctcaacaacgacagcttgacacgtgtgccc
acactatgggatatcaacaccccagcacagaaccaaccagagctaaactccaccaggttt
cagggtctgaacagtttagaggacctgagagccagtatccatacccatactcctctggca
gcattccagccacagaggcctcccacaccacctgagaatgagcaggaggcagatgaggag
gaggcggaggaactgggccatgtggacacctacgcagactacaaaccctccaaatccacc
gtagggatatcccatcctgaccgggtggtggagaccaacaccctgtccagcgtgcctccc
cccgacatcacctacaccctctccatcccagaccccaccatcagcagcggcctgctgtcc
gccctgcagctcgaggctatcatctacgcctgccagcaacacgaggtgattctgcagaac
cagcagagagcaggctacctgatcggagacggggccggggtgggcaagggccggactgtg
gccgggatcatcctggaaaactacctaaagggaaggaagagagcgctgtggttcagtgtt
tccaacgacctgaaatatgacgcagagagagatctcaaagacatcaacgcacccaacatc
cccgtgcatgccttaaataagataaagtatggggacacagctacctcagagggcgtgctg
tttgccacgtactccgcactgattggagagagccaggccggtgggcagcttcgcactcga
ctcaagcagatcctggactggtgccaaccagactttgagggagtcattgtgtttgatgaa
tgtcacaaagccaaaaacgccacgtcgactaagatgggcaaggcggtcctggacctgcag
aacaagctgccccgggccagggtggtgtacgccagcgccacaggcgcctctgagccaaag
aacatgatctacatgagccgcctgggcatctggggagaagggaccccgtttcggacgttt
gatgacttcctccacgtcatcgaaaagaggggtgttggtgctatggagattgttgccatg
gacatgaaggtcagcggaatgtacatcgcacggcagctcagcttctcaggcgtgtccttc
cacatcgaggagatcagcctggacgaggacttcaagctggtctacaacaaggccgccaaa
ctgtgggccgaggcgctgactgtgttcacgcaggcggcagacatgctgtgcctgagatcc
aggaagtccctgtggggacagttttggtcgtcgcaccaacgcttcttcaagtacctctgc
atcgccgccaaggtgcgccgtctggtgctgctggccaagaaggagctggcggctggcaag
tgtgtggtgatcgggctgcagtccacaggagaggctcggacacgagaagtgctcgacgag
aacgatgggcacctcgacagatttgtgtctgcggccgagggtgtctttcagtctctggtt
cacaagcattttccctcagagaagcagagagaaaagagtgcgggaagcaagaggaaacga
aagccccgcggacggcagcccaagtacccgaggcaagtgcaggagtgcgccgtagtcatc
cagatcagcgacgccagcagcagcgacaccgaggccatggacagcgactccaactcctcc
cccgactcgctgcaggacaacagcgacgacgttatcttcgtcaaccagaccaatggccac
accgcagaaacaggaaaaatgaaggccagcctactgaccaagatcgcagaactgggaaaa
gaactacctctgaacacactggatgagcttatagacaaacttggaggccctgagaaagta
tccgagatgacggggcgtaagggccgggtggtacggcaccccgacggcactgtgggctac
gagtcgcgtgccgagcaaagccacaccatcgaccagatcaacgtcaaggagaaggaccgc
tttatgaacggggagaagctggtggccatcatctcggaggcggccagctcgggcatctcc
ctgcaggcagacaagcgtgtgaggaaccagcggcggcgggtgcacatgaccctggagctg
ccctggagcgcagacagagccatccagcagtttggccgcacgcaccgctccaaccaggtc
acggcgcccgagtacgtcttcctcatctccgagctggccggagagcggcggtttgcttcc
atcgtggccaaacgcctggagagtctgggcgctttgacccacggagacaggagggcctca
gagtcccgagatttgagcaagtacaactttgaaaacaaatatggcaccaaggctctagat
aagatcaccaaagccatcctgggatacactgagagtaaagtggcccctcccaaagactat
cctggatgcgatgctatgttctttagtgatatgaaacaagggatgatgaatgtgggcatc
ttctgcagggacccgcgcttaggcctcaacactgagaaagactgcaccatcaccaagttc
ctgaaccgtatcttgggtctggaagtgcacaagcagaactccctgttccagtacttcacc
gacaacttcgactacctgattgcgaaggacaagaaggagggcaaatatgacatggggatc
ctggatctggccccaggcaatgacgagatctatgaggagaaacaagaagagttcttgacc
gtggggaacccacacgatggccaagtcgtactttataagatcacagtggacagaggcatg
ccttgggaagaagcctttgagaagtcccaaaaactgagcggctcggacgacggcttctac
ctctctcacaagctgaggggcactcagccctgtgtgctgctggcggagcagggtcgaggc
cacagcctcattgtccacaagcccaacatcggcaagcaggcccagctcgagagcctggac
aacatgaggaaccgctaccggaaggtcactgctgacgaggcaagggagatctgggagaat
cagtacacattctctttcaagaaatgcagccatgctaactggaatgggaagtgtaaaaag
gtggaggaggggcaggagtgcacgcagggcatgcgtctgcgtcagtaccacatgctgtgc
ggcgccctgctgcgcgtgtggaagcatgtcgccgacgtggtggccgacctcaccggctcc
agcatcctgcagattgtccgcctcaagaccaaacagctccacaagcaagttggtattaag
attcctgagtcgtgtgtgttgcgcgtgcgtgaggagctgcagcagatggacggcgaggtg
aagcggcggcggcgggagcgggaggagctacagcggcagtcgtacatcgacctcctcagc
cagctccccttcccgtccaaccccagccagttgagcggcctctcccccttcctctacacg
ccacctccaggggccgtcttcccgtcgctgtcaaaaacccctctggcggacatgctggac
agcacagagggcggagccttgggtctgagtgacccagccgaggacttcagcatggagcct
ctggagtctcagcagcagcagccgcagcagcaggagaaagagaaggacaagctttcactg
gagttcatggacagcatccaactgttcgacttgaacctctgcccaccgcttcacagccca
ctgccgcccaccccgtcttcacccacggccctgacctcttcctctccgtccttcttccac
gagatgccctcgttgaccctgcccagtgcaccgtgcaacactgatgtccacattgacttc
cgcgaggtgctgaacaacatgttccagagcggttcggacaggcagtccgtcatcaagctc
ccactgcagggcagggactcttcttaa
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