Clupea harengus (Atlantic herring): 105889715
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Entry
105889715 CDS
T09045
Symbol
cftr
Name
(RefSeq) cystic fibrosis transmembrane conductance regulator
KO
K05031
cystic fibrosis transmembrane conductance regulator [EC:
5.6.1.6
]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char02010
ABC transporters
char04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
char00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
105889715 (cftr)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
105889715 (cftr)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
char02000
]
105889715 (cftr)
Enzymes [BR:
char01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.6 channel-conductance-controlling ATPase
105889715 (cftr)
Transporters [BR:
char02000
]
ABC transporters, eukaryotic type
ABCC (CFTR/MRP) subfamily
ABCC7 subgroup
105889715 (cftr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
CFTR_R
ABC_tran
AAA_21
SMC_N
RsgA_GTPase
AAA_29
MMR_HSR1
DUF87
AAA_16
nSTAND1
FtsK_SpoIIIE
T2SSE
Zeta_toxin
ATP-synt_ab
Motif
Other DBs
NCBI-GeneID:
105889715
NCBI-ProteinID:
XP_012671078
Ensembl:
ENSCHAG00000012174
UniProt:
A0A6P3VGQ1
LinkDB
All DBs
Position
3:complement(28160278..28183791)
Genome browser
AA seq
1514 aa
AA seq
DB search
MQKSPVEDANWLSKYFFWWTYPIMRKGFTERLGPSDVYQAPSFDKADVLADHLEREWKKE
VDSGKKNPRLLFALVRVRSFFWTFMICGVLLFLGEASKTVQPQLLGRIIAQFDPFHAAER
SQGYFLALGLSLLFTARFLLLQPAVFGLHHLGMQIRIALFTLIYKKTLKLSSRVLDQIST
GELVSLMSAHLSKFDQSMGMAHFVWISPLQCILSVGLVWELIDVNGFCALAAISLLGIIQ
AGLSHKMGPYKTQRAKLTSKRLALTSDIVENIHSVKAYGWEEVMETIINNMRKKEVKLTQ
KIGSLRYFYSSAYFFSAIWIIVAAIVPHALSRGIILRRIFTTLSYCIALRITITRQLPAS
IQMWYDTIALLKKIEDFLSKEEYKMPEYNPNATGLRLDNVTASWDEGIGELFDKIRRENK
DKENGHMNGDGGLFFTNLYVTPVLRKITLRLEKGEMLALAGSTGSGKSSLLMTVLGELVP
SEGTIRHSGRISFSPQTAWIMPGTIRDNILFGLNYDEYRYNSVIKACQLEQDLAAMPEND
GTALTEGGLNLSGGQKARVALARAVYKDADVYLLDAPFTHLDIATEKEIFERCMLKLMAS
KTRVLVTSKLEHLKRADKILLLHNGDCFFYGTFSELQAQRPDFSSLILGLEGYDNIKAER
RTSILSDTLRRVSVDESAGYRSERPSFRPPQPPHLPAYMEQHREERRSSVLLNPLAAAAR
KLSFIPSSSSMAGDEEVLVRRPAPDRKLSLMPEDELVDESFSGGDVYHNHSVHMAGQRRQ
SVLDFITNAGGAGRRDPNRSSFRRKMSILPQSDLTSEVDIYARRLSEDFNDANDFDFSGD
MDGEHIEACFADQQIEDVFETTKWNTYVRYVSTNKNLIYVLIFIFIVFAAEVALSVIGIK
LITDKVWREEHHWFNYNATHYPNMTQPEQFFPVIVTPTSIYYIMYIYVATSESVLALGFL
RGLPLVRTMITISQRLHEKMLAAVLRAPMAVLNTMKTGRIMNRFTKDMATIDDMLPLLMF
DLIQLLLIVVGCLLVVTILRPYIYLAATPLAIIFMLMRKYFLRTGQQLKQLETEARSPIF
SHLIISMKGLWTIRAFGRQAYFEGQFQKALNTHTATWFLYLSTLRWFLFRADVIFTLFFT
LAAWIAVGTTKDPYVGDVGIIVVMAMLINSTFQWCVVTSIAVDGMMRSVDRVFKFIDLPS
EEPKSDGLGSSKGGKDKGSGLVIENVDAWAYTAWPNRGQLDVQKLSVKYTEAGQTIIKDL
SFTVDGGQRMGLLGRTGSGKSTLFNGLLRLADTDGEVLIDDVSWNNMSLKAWRRAFGVIP
QKVFIFTGSFRMNLDPYNRHSDEELWKVTEEVGLKSVIEQFPDKLEFQLEYGGQVLSNGH
KQLMCLARSILRRARILLLDEPSAHLDPITIKALKSTLRDSFSTCTLLMSEHRMETLLEC
QSFLLLDQSTGKTFDSIQKLLNETSHLKQAMSPHERLKLFPRRNSSMRVPQPKISTVGLT
LEEEAEDDFQDTRL
NT seq
4545 nt
NT seq
+upstream
nt +downstream
nt
atgcagaaatcacctgtggaagatgccaactggctctccaaatatttcttctggtggaca
taccctattatgaggaagggtttcacggagagattaggtccttcagatgtgtatcaagct
ccatcttttgacaaagccgacgtcctcgctgatcacttagagagagaatggaaaaaagag
gttgattctggaaagaagaatcccaggctgctctttgcactggttcgagttcgaagtttc
ttttggactttcatgatttgtggagtcctcttgtttttgggggaagcctcgaaaactgtt
cagcctcagctcttggggcgcatcattgcccagtttgaccctttccatgcagctgagcgg
tcgcagggctacttcctggccctgggcctgagccttctcttcaccgctcgcttcctgctc
ctccagccggccgtctttggcctgcaccacctgggcatgcaaatcagaatcgctctgttc
accctcatctacaagaagaccctgaagctctccagccgagtcctggaccagatcagtact
ggggagctggtcagcctgatgtcagcgcatctcagcaagtttgaccagagtatgggcatg
gcccactttgtgtggatctcaccgctgcagtgtatacttagtgttggtctggtgtgggaa
ctcatagacgtcaatggcttctgtgccctggctgccatctcactgctaggcattatccaa
gctggtctctcacacaagatgggcccttacaagacacagagggccaagctgacgagtaag
aggcttgccttaacttcggatatcgtggagaacattcactctgtaaaggcctatggatgg
gaagaggttatggagaccattattaataacatgagaaagaaagaggtgaagctcacgcag
aagatcggctcgctgcgctacttctacagctcggcgtacttcttctcggccatctggatc
atcgtggcggccatcgtgccccacgccctgagccggggcatcatcctgcgacgcatcttc
accaccctgtcctactgcatcgccctgcgcatcaccatcacccgccagctgcccgcctcc
atccagatgtggtacgataccatcgccctgctcaagaagatcgaggattttctgagtaag
gaggagtacaagatgccggagtataacccgaatgcaactgggctgagacttgacaatgtc
actgcttcatgggatgagggtattggggaattgtttgacaagattcggcgtgagaacaaa
gacaaggaaaatggtcacatgaacggggacggcgggctctttttcaccaacctctatgtg
acgcccgtgctgagaaagatcaccctgagactggagaagggagagatgctggctctggct
ggatccacaggctctgggaagagctctctgctgatgacagtattgggggaattggtccca
tctgaggggaccatccgccatagtggccgaatctccttctcgcctcaaaccgcctggatc
atgcccggcaccatccgagacaacatcctgtttggactgaactatgatgagtaccgttac
aacagcgtcatcaaggcctgccagcttgagcaggacttggccgcgatgcctgaaaatgac
gggactgccctgacagagggaggtctgaacctgagtggaggccagaaagccagagtggct
cttgccagagccgtgtataaggatgccgatgtctacctgctggatgccccattcacccac
ctggatattgccacagagaaggaaatctttgagagatgtatgctcaagctcatggcctca
aagacccgggtgctagtcaccagcaagctggagcacctgaagcgcgccgacaagatcctg
ctgcttcacaacggcgactgctttttctatggcaccttctccgagctgcaggcccagcgg
cccgacttcagctcgctgatcctgggcctggagggctacgacaacatcaaggccgagcgc
cgcacctccatcctgtccgacacgctgcgccgcgtctccgtggacgagtcggccggctac
cgctccgagcggccctcgttccgcccgccccagccgcctcacctgcccgcctacatggag
cagcaccgcgaggagcgccgatcctccgtgctgctcaacccgctggcggcggccgcgcgc
aagctctccttcatcccctcgtccagctcgatggcgggtgacgaggaggtgctggtgcgg
cggccggcgccagacaggaagctgtcgctcatgcccgaagacgagctggtggacgagtcg
ttctcgggaggggacgtgtaccacaaccacagcgtgcacatggccggccagcggcggcag
tcggtgctggacttcatcaccaacgccgggggagcaggccgccgggaccccaaccgctcc
tcgtttcgccggaagatgtcgatcctgccccagagcgacctgacctcagaggtggacatc
tacgcccggcgtctctctgaagacttcaacgacgccaatgactttgacttcagcggggac
atggacggcgagcacattgaggcttgctttgcagatcagcaaattgaagacgtctttgaa
acaaccaagtggaacacatatgtccgctatgtgtccaccaacaagaatctcatctatgta
ctcatcttcattttcatagtctttgcagctgaggttgccctctctgtcattggcattaaa
ttgatcacagataaggtctggagggaggagcatcactggttcaactacaacgcaacccac
taccccaacatgacacagccggagcagttcttcccggtcatcgtcacgccgaccagcatc
tactacatcatgtacatctacgtggccacctccgagagcgtgctggcgctgggcttcctc
cgcgggctgccgctggtccgcaccatgatcaccatctcgcagaggctccacgagaagatg
ctggccgccgtgctgcgtgcacccatggccgtactcaacaccatgaagacaggtcgcatc
atgaaccgcttcaccaaagacatggccaccattgacgacatgctccccctcttgatgttc
gacctcattcagctcctcctgattgtggttggttgcctgttggtggtgaccatcctgcgg
ccctacatttaccttgcagcgacgccattggccatcatcttcatgctcatgagaaagtac
ttcctgcggacaggccagcagttgaaacagctggagacagaggctcggagtcctatcttc
tctcacctcatcatatccatgaagggtctgtggacgatccgggcctttggacggcaggcc
tactttgaaggccagttccagaaggccctcaacacccacacagccacatggttcctctac
ctctccaccctgcggtggttcctgttccgggctgacgtgatcttcaccctgttcttcacc
ctggctgcctggattgcagttgggaccacaaaggacccttacgtgggtgacgttggtatc
attgtggtcatggccatgcttatcaatagcactttccagtggtgtgtggtcaccagcatt
gctgtggatggaatgatgcgctctgtggaccgagtcttcaagttcatcgacctgccatcg
gaggagcccaagtcggatggtttagggtctagcaaaggcggcaaggacaaaggctctggc
ctggtcatcgagaacgtagacgcctgggcttacactgcatggcccaaccgcggccagctg
gacgtgcagaagctctccgtgaagtacacagaggcaggccagaccatcatcaaagacctc
tccttcactgtggatggtggtcaacggatgggtctgttgggaaggacagggtcagggaag
agcaccctcttcaatggacttctgcgtctggccgacactgacggtgaggtcctcattgat
gatgtttcctggaacaacatgtccctgaaggcctggaggagagcttttggagtcatccca
cagaaagtctttatcttcaccggaagtttccgcatgaacctggacccgtataaccggcac
agtgatgaggagctgtggaaggtcactgaggaggtgggcctgaagtcggtcattgagcag
ttccccgacaagctggagttccagctggagtatgggggtcaggtcctgagcaacggccac
aagcagctgatgtgcctggcccgctccatactcaggagggcccgcatcctgctgctggac
gagcccagtgcccatctggatcccatcactataaaggctctgaagagcacgctgagggac
tccttctccacctgcaccctcctgatgtcggagcacaggatggaaacgctgctggagtgc
cagtccttcctgttgctggaccagagcacagggaagacgttcgactctatccagaagctg
ctgaacgagacgagccaccttaagcaggccatgagcccgcacgagcgcctcaagctgttc
cccagacgcaactccagcatgcgggtcccccagcccaagatcagcaccgtgggcctcacc
ctggaggaggaggccgaggacgatttccaggacacccgcctatga
DBGET
integrated database retrieval system
