Clupea harengus (Atlantic herring): 105889716
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Entry
105889716 CDS
T09045
Symbol
lingo1a
Name
(RefSeq) leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1
KO
K23533
leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
char04131
]
105889716 (lingo1a)
Membrane trafficking [BR:
char04131
]
Endocytosis
Lipid raft mediated endocytosis
RhoA-dependent endocytosis
105889716 (lingo1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_5
LRR_4
I-set
Ig_3
ig
Ig_2
LRR_9
LRRNT
V-set
Motif
Other DBs
NCBI-GeneID:
105889716
NCBI-ProteinID:
XP_012671079
Ensembl:
ENSCHAG00000006719
LinkDB
All DBs
Position
3:27666483..27739570
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AA seq
615 aa
AA seq
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MVAAEASGHSYLVACWQPILILMLGTVLSGSTTGCPSRCECNVQERAVVCHRKKLMSVPE
GIPAETRLLDLSKNRIKTIDSDEFASYPNLEELELNENTISVIEPGAFNNLYNLRTLGLR
SNKLKLIQLGVFTGLSNLTQLDISENKIVILLDYMFQDLYNLRSLEVGDNDLVFISHRAF
HGLSSLEQLTLEKCNLTAVPTEAFTHLPSLISLRLRNLNINIIKDYAFKRLYRLKVLEIA
NWPFLDTMTTNSLYGLNLTSLTITSGNLTSIPYVALRHLVYLRFLNMSYNPLVTIEGNRL
HDLLRLQEFHLVGGRLAVIEPYAFRGLNYLKILNVSANTLTTLEESAFHSVGNLETLALY
DNPLACDCRLLWIFRRRWRLNFNRQQPTCASPEFVQGKEFKDFPDILQPNYFTCRRSRIR
DRKPQQKFIDEGTTVHFVCQADGDPAPVIMWFSPQKQFITTKTIGRLTVFPDGTLEVRYA
QIQDNGTYMCIASNAGGNDTALAHLHVHSYSPDWPHQPNKTFAFISNQPNENGANGTKAA
VPFPFDIKTLIIATTMGFISFLGVVLFCLVLLFLWSRGKGNTKHNIEIEYVPRKSDAGIS
SSTADAPRKFNMKMI
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atggtggccgcggaagcgagtgggcacagctacctggtggcttgctggcagcctattctc
atattgatgcttggcactgtgctgtcaggctccaccacaggctgcccgtcacgctgcgag
tgcaatgtccaggagcgcgcggttgtatgccaccgcaagaagctcatgtccgtcccagag
ggcattcctgctgagacgcggctgctggacctcagcaagaaccgcatcaaaaccatagac
tctgatgagtttgccagttacccaaaccttgaggagctggagctaaatgaaaacaccatc
tctgtcattgaaccaggggccttcaacaacctctataacttacggacactggggctccgg
agcaacaagctcaagcttatccagctgggcgtgtttacaggtctgagcaacctcactcag
ttggatatcagcgaaaacaaaatagtcattcttctggattatatgttccaagacctgtac
aacctcaggtcccttgaggttggagacaatgacctggtgttcatctcccatagagcattc
catggcctcagcagcttagaacagctcaccctggagaagtgcaacctgactgccgtcccc
acagaagccttcacccacctccctagcttgatctcgctccgcttacgcaacctcaacatt
aacatcatcaaggattatgccttcaaaaggctctaccgactcaaagtgcttgagattgcc
aactggcctttccttgacaccatgacaacaaacagcttgtatggtttaaacctcacttct
ctgaccatcaccagtggtaatcttacgtccattccctacgtggctctccgacatctggtc
tacttgcgttttctcaatatgtcatacaacccccttgtcaccatcgagggtaataggctt
catgacctccttaggcttcaagaatttcatctggtgggcggcaggcttgctgttatcgag
ccctatgccttcagaggcctaaattatcttaagatcctcaatgtgtctgcaaacactctg
accacgttggaagaatctgcttttcattcggtaggaaacttagagacgttggctttgtat
gacaaccccctggcttgcgattgtaggcttctgtggattttccgtagacgatggagactc
aacttcaaccggcaacaaccaacctgcgcctctcctgagtttgtacaaggcaaggaattc
aaggatttcccggacatcctccaacccaactacttcacttgccgcaggtcgagaatccgt
gaccgcaagccacagcagaaattcattgatgaagggaccactgtccactttgtatgtcaa
gcagatggtgaccctgctccagtcatcatgtggttctccccacagaagcagtttatcact
accaagaccattgggcgtcttacagtgtttcctgatggcacccttgaagtgaggtatgcg
cagatccaggacaacggaacatacatgtgcatagccagcaatgccggtggcaatgacact
gcgctagcccacctgcatgttcacagttactctccagattggcctcatcagcccaacaaa
accttcgctttcatatctaaccagcccaatgagaatggtgccaatgggacgaaagccgcc
gtcccctttcccttcgacataaaaaccttgatcatcgccaccaccatggggttcatctct
ttccttggtgtcgttcttttttgtctcgtgctgctgtttttgtggagcaggggtaaagga
aacaccaagcacaacatagagatcgaatatgtgccacgcaagtccgacgctggtataagc
agcagtaccgcagatgcccctcgcaaatttaacatgaaaatgatttag
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