Clupea harengus (Atlantic herring): 105889937
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Entry
105889937 CDS
T09045
Symbol
depdc5
Name
(RefSeq) GATOR complex protein DEPDC5 isoform X1
KO
K20404
SEA/GATOR complex protein SEA1/DEPDC5
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04150
mTOR signaling pathway
Brite
KEGG Orthology (KO) [BR:
char00001
]
09130 Environmental Information Processing
09132 Signal transduction
04150 mTOR signaling pathway
105889937 (depdc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
char04131
]
105889937 (depdc5)
Membrane trafficking [BR:
char04131
]
Autophagy
Other autophagy associated proteins
SEACIT/GATOR1 complex
105889937 (depdc5)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEPDC5_CTD
vWA_IML1
IML1_N
IML1_small
DEP
IML1_N_fung
PLP_IMCC1989
Motif
Other DBs
NCBI-GeneID:
105889937
NCBI-ProteinID:
XP_012671329
Ensembl:
ENSCHAG00000013405
UniProt:
A0A6P3VH31
LinkDB
All DBs
Position
12
Genome browser
AA seq
1606 aa
AA seq
DB search
MTITMKTNKSYKLVVHKKGFGGSDDELMMNPKVFQQVALGDIVEIAHPNDEYSPLLLQVK
SLKEDLQKETISVDQTVAQAFKLRAYQDVIINIVDPKDVTLDLVELTFKDQYIGRGDMWR
LKKSLVSTCAYVTQKVEFAGIRAQASELWVKGEKVTCGYISEDTRVVFRSTSAMVYIFIQ
MSCEMWDFDIYGDLYFEKAVNGFLSDLFAKWKEKNCSHEVTVVLFSRTFYSAKSQDEFPE
ILRGSIRQDHEGRFYEDFYRVVAQNERRDEWTSLVITIKKLFIQYPVLVRLKGADGFPCG
QNSTAVQGNYLEAINLSFNVFDKHYINRNFDRTGQMSVVITPGVGVFEVDRLLMILTKQR
MIDNGIGVDLVCMGEQPLHAVPLFKLHNRTVPGDSRLGDDYNLPHWINHSFYTSKSQGNC
SSFTPRIKLAGRKVHAEKAKSNKEHSLGAPKDSENSLPIQVDYDAYDAQVFRLPGPSRAS
RSTNFRSSRERETSGRKSWGSAEASGGGPGTGGASPPTRGPGGGPDEQRSLASDDSLGRV
SNILLIPRGPPAQYEVSSSLGYTSTRDILEKMLESQREWSAPGRFTVGSAESTLHVRPGG
YTPQRALINPFAPSRMPMKLTSNRRRWMHTFPVGPSGEPIQIHHQTRQNMVELQGSEQRD
PAHTSAELLELAYHEATGRRTICRHGGENGFYITTGTEEFSGSPASSNSTGTPVNRGSSF
EDFSSGGPDPTLLLSAPPTVPSFCCTVGVDWKSLTTPACLPLTTDYFPDKQSLQNDYTEG
CYDLLPHTELDRRDEDAPVMTAPQVFEEFICQRLMQGYQIIVQPNARKQAPPSAAPPLSS
SPLYSRGLVSRRRPEEEESIYWLSMGRTFHKVCLKDKIITVTRYLPKYPYESAQIQYSYS
LCPPHAEAHFLSCWVEFSHERLEEYKWNYLDQYICSAGSEDFSLIDSLKFWRTRFLLLPA
GAGARRVADGDGHWDVYGEGFGVPGSDWAPLDGFIRFLEGLNRIRRKHRSDRITRKGAGM
KGLQVTGPLSPYPPEPIALPKKGTSALSALLELDQTQKTLEEQQAAQHGGKAAGPLSEAS
TVATATTYVDSPRKDAGFLLDFIRSPRSSYIYHSQMPADPPAANVAESGLTDKAANQSAG
AGTQSSGDTASGVSTETSGLVGSGVLTLSSSSTLLEILEAIKHPTTGVQLLPEQKGLPPN
TFISAEVVHWLVSTVEGVDTQGMAVDIMQKMLDEGVIAHASGDAMRTFVYGFYFYRIVTD
KDGERAPSTQLPPSGAGVWSTAVLEDFALFQRKWFEVAFVLEERRPCDLPAFLLPWLPSR
PASYASRHSSFSRSFGGRSQAAALLAATVPEQKTVTLDVDVNNRSDRTEWCSCYYHGNFS
LNAAFEIKLHWMAVTAAVLFEMVQTWHRKAASCGFLLVPVLEVPFALPSYLYGDPLRAQL
FIPLHIQCLLREGSDNLFEGFEPETYWDRMQLFQEAILYRFGFVQDKFSASAFNFPSENK
PQYVHVTGTVFLQLPYSKRKYPSGQQRRRRNSTNSATQSLFGVDECVGYYWAYNTMLTKA
WRTGLLGDERLGERLLRDFTDFCSNKDNRLANFWESCLDKMNSSAP
NT seq
4821 nt
NT seq
+upstream
nt +downstream
nt
atgaccatcacaatgaagacaaacaaatcttacaagctggtggttcataagaaaggcttt
ggtggaagtgatgatgagctgatgatgaatcccaaggtgttccaacaggtagccctgggg
gacattgtagagattgcacatcccaatgacgagtacagtcctcttctgctgcaagtcaag
agcctgaaagaagacttgcagaaagagacaatcagtgttgaccagacagtggcccaggcc
ttcaaactccgtgcctaccaggatgtcatcatcaacattgtggatcctaaggatgtcacc
cttgatcttgtggagctcaccttcaaagatcagtacatcggtcgaggagacatgtggagg
ctaaagaagagtttggttagtacttgtgcatacgtgacccagaaggttgagtttgctggc
atcagggcccaggccagtgaactgtgggtcaaaggtgaaaaggtcacatgtgggtacatc
agtgaggacaccagggtggttttccggtccacttcagcgatggtttacatcttcatccag
atgagctgtgaaatgtgggactttgacatctatggagacctttactttgaaaaggcagtc
aatggtttcttgtcagatctctttgccaagtggaaggagaagaactgcagccatgaggtg
acggtggtgctcttctctcgaaccttctactccgctaaatctcaagatgagtttcctgag
atcctgaggggttctatccgacaggaccatgagggacgcttctatgaggacttctacaga
gtggtggctcagaatgaaaggcgagatgagtggacatctctcgtcatcaccatcaagaaa
ctcttcatccagtaccctgtcctggtgcgcctcaaaggagcagatggcttcccctgtggt
cagaactccacagcagttcaggggaactacctggaggctatcaacctctctttcaacgtg
tttgataagcactacatcaaccgtaactttgaccgcacggggcagatgtctgtcgtaatc
acaccaggtgtgggggtgttcgaggtggaccgtctgctcatgatcctcaccaaacagcgc
atgattgacaacggtatcggagtggacctggtgtgtatgggagagcagccgctccatgcg
gtccctctgttcaagttgcataaccggacagtgccaggagactccaggctgggtgacgac
tacaacctgccacactggatcaaccacagcttctatacatccaaaagccagggcaactgc
agctctttcaccccaaggataaagcttgcaggacgcaaggtccatgcagagaaagccaag
agcaataaagaacactccctcggagcccctaaggactcggagaacagcctccccatccag
gtggactacgacgcctacgacgcccaggtgtttcggttgccagggccctcacgagcctca
cgcagcaccaacttccggtcaagtcgtgagagggaaaccagtggtcgtaagagctggggg
tcggccgaggccagcggtgggggcccagggaccggaggggcgtcccccccaacgaggggc
cctggaggggggccggacgagcagcggagcctggcctctgacgacagcctaggccgtgtg
tccaacatccttctgatcccacgcggcccaccggcccagtacgaggtcagcagctccctg
gggtacaccagcaccagagatatcctggagaagatgcttgaatcccagcgtgagtggagc
gccccgggccggttcacggttggcagtgccgagtccacgctgcatgtgcggccgggcggg
tacaccccacagcgggcgctcatcaacccctttgccccctcacgcatgcccatgaagctc
acctccaaccgcagacgttggatgcacaccttccccgtgggcccatcgggagaacccatc
cagatccatcatcagacgcgacagaacatggtggaactgcagggcagcgagcagagagac
cccgcccacacctccgcagagcttctggaactggcctatcatgaggccacaggcaggaga
acaatttgtcgtcatggtggagagaatggcttctacatcaccacaggaacagaggagttc
tcaggtagcccagcaagcagcaacagcactggaacacctgttaatcgtggatcatcattc
gaagacttctcctctggtggcccagacccaaccctgctgctgtctgcccccccgacagtg
cccagtttctgctgcacggtgggggtggactggaagtctctgaccacgcccgcctgcctg
cccctcaccaccgactacttccccgacaaacaatcgcttcagaacgactataccgagggc
tgctacgacctgctgccacacacagaactggacaggcgcgatgaggacgctccagtgatg
acggcgcctcaagtgttcgaggagttcatctgtcagagactcatgcagggctaccagatc
atcgtccaaccaaacgccaggaaacaggctccgccctccgctgccccgcccctcagcagc
agcccgctctactctagaggtctggtgtcccggcggaggcctgaggaggaggagagtata
tactggctcagcatgggccgcaccttccacaaagtttgcctgaaggacaagatcatcacc
gtcacgcgctacctgcccaagtacccgtatgagtcggcgcagatccagtacagctacagc
ttgtgccctcctcatgctgaagcccacttcctgtcctgctgggtggagttcagccacgag
aggctggaggagtacaagtggaactacctggaccagtacatctgctccgctggatcagag
gacttcagtctgattgactcgctgaagttctggcgcacacgcttcctactgctcccagcc
ggggcaggggctaggcgtgttgccgatggcgacggccactgggacgtgtacggcgagggc
tttggggtgccgggctcagattgggcgccactggacggcttcatccgcttcctggagggg
ctgaaccgcatccggcgcaaacaccgctccgaccgcatcaccaggaaaggagctggcatg
aagggcctccaggtaacaggtccactctccccctacccacctgagcccatagcgctcccc
aaaaagggaacttcggctctctcagcactactggagctagatcagacacaaaagactcta
gaagaacagcaggctgcccaacatggcggcaaggcggctgggcccctcagcgaggcctct
accgttgctacggctaccacctatgtcgacagcccccgtaaggacgctggcttccttctg
gattttatccggagccctcgctcctcatacatctatcactctcagatgccagctgaccca
ccagcagccaatgttgctgaatctgggctcactgacaaagcggccaaccaatcagctggt
gctggcactcagtccagtggagacacagcctctggagtttccacggaaaccagtggcctt
gtcgggtcaggggtgctcactctctcctcctcttcaacgctcctggagattctggaggcc
atcaagcaccccaccactggagtgcagctcttgccagagcagaagggcctcccccccaac
accttcatcagtgctgaggtggtgcactggcttgtcagcactgtggagggggtggacaca
cagggtatggctgtcgacataatgcagaaaatgctggatgagggtgtgatagcacacgcc
tcaggagacgccatgcgtaccttcgtgtacggcttctacttctacaggatagtgacagat
aaggatggagagagggccccctccacccagctgcccccttcaggtgcgggtgtgtggtcg
acggcagtgctggaggactttgcgctgttccagaggaagtggtttgaggtggcgttcgtc
ctggaggagcggcggccctgcgacctgcccgcattcctgttgccatggctccctagccgc
ccggcgtcgtacgcaagtaggcacagctctttcagccgcagcttcggaggacgcagccag
gccgccgcactgctagctgccaccgtgccggagcagaaaacggtcaccttggacgtcgac
gtgaacaatcgcagtgatcgcaccgagtggtgcagctgctattaccatggcaacttctcc
ctgaacgctgcatttgagatcaagctgcactggatggctgtcacagcggcagtcctcttc
gagatggtgcagacttggcacagaaaggctgcatcgtgtgggttcctgttggtgcctgtg
ctagaggtgcccttcgccctgccctcatacctgtacggagacccactccgcgcccagctt
ttcatccccctccacatccagtgcctgctcagagagggttctgacaacctgtttgaggga
tttgagcctgagacgtactgggaccgtatgcagctcttccaggaagccattctttacaga
tttggatttgtccaggataagttctcggcctcagctttcaacttcccatcggagaacaag
ccccagtacgtccacgtcacaggtacggtgttcctccagttgccctactctaagcgcaag
tatcccagtgggcagcagcgacgcagacgcaactccaccaactccgcaacccagagcctg
tttggcgtcgatgagtgcgtggggtactactgggcctacaacaccatgctgaccaaagcc
tggcgcacgggcttgctcggagacgagaggctgggcgagaggttgctccgcgacttcact
gacttctgctccaacaaggacaaccgcctggcaaacttctgggagagctgcctggacaag
atgaactccagtgccccctag
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integrated database retrieval system
