Clupea harengus (Atlantic herring): 105890032
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Entry
105890032 CDS
T09045
Symbol
ttc37
Name
(RefSeq) tetratricopeptide repeat protein 37
KO
K12600
superkiller protein 3
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105890032 (ttc37)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
char03019
]
105890032 (ttc37)
Messenger RNA biogenesis [BR:
char03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
105890032 (ttc37)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_11
TPR_8
TPR_19
TPR_17
TPR_16
TPR_12
TPR_14
TPR_CcmH_CycH
CFAP70_TPR_C
TPR_9
CFAP70_mid_TPR
ANAPC3
CABIN1_N
ARM_TT21_C
TTC22_N
TPR_7
TPR_30
COG4_N
TP_0752_M
Fis1_TPR_C
Motif
Other DBs
NCBI-GeneID:
105890032
NCBI-ProteinID:
XP_012671452
Ensembl:
ENSCHAG00000027845
UniProt:
A0A6P3VGD6
LinkDB
All DBs
Position
7:complement(6601916..6618182)
Genome browser
AA seq
1567 aa
AA seq
DB search
MSSKEVKAALKSAREAIKNKEYKEALKHCKNVLKLEKNNYNAWVFIGVAAGELEQPDQAQ
AAYKKATELESDQLLAWQGLANLYEKNRQTDFKSELPVVYQKLIALYESSDKVKCQEVSR
KLVDLHLQEKDYLQVARVWQRLIQLQEEGGAEQAEQLQLWKEMTQVLQDSVEEQDNETLQ
HLITAFEKAMTLTESAPCEDHKKLSMDFISCLSKLPHEEAKLKEVCEAMLFAYPSQPFPL
EALCSHYLKSGTCSEEAVDCFRRLLELDAGSGPALLCLGVKALEEKKYEDATKSLSQGLK
RMPSSVVGWYSLAQGHLKMHKYTDSAKSCTQGLRCCKDSDTELIQKLQRLKLESLVRTGA
ENTRDEALDTLTQICDSSKDPVLLSFKGKIYLQKGLIDQALEVSSELEASHPDSVEGMIL
KGLLHQARDELQQAEESFQKALSLCPESGELYFLLGQLYWLMGEEARRDRSKAHTHLLKA
AKLDPYLGSVFRHLGHYYREVVRDLGRARGCYKRAFELDGSDGEAGAAAVDISMEQGDMD
SALAILTSVTERATPGSAKWAWMRRGLYHLKISQHQQAVTDLQAALRADPLDWVCWECLG
EAYLHRHSFTTALKAFTKAHLLRPDSIYSLYQMAAIKQTLGKFKEAAGEYMKIVQREDYV
PALKGLGECSLALARSALGDYLDGRAVDLIQSAIEYLFRGVQRRPDLSCLWKLLGDACSL
SGTVAPERAHVLVPGALSGDGSPDQNHRLDQRTLLRLGERCYGRALKLMPEAASLWCDLG
INYYRQCLKLLSLNQEQDLQMLLEKSVQCIKKAVMLDSDNYSFWNALGVVSMVTGLENFA
LAQHCFIKSVKVEPNNVVAWTNLGVLYLKKENLELSHEAFKVAQSLEPLYVNCWIGQALI
AEMVGSYDAMDLFRHTTELNTHTEGVNGYACWVCSTLLDKSNRDSELYRYNILQMNATSA
AQVALCKYTERIQTDPRAFVMLGYLNEHLKLKKQAVVAYRRAVELLQSSPHVEELNFALR
NYGRALCDTGQWEEAVRVYSSTPLEELQDLTGLALAYFRAGLLQESLSSYEKALAVASAE
RERAYIFTALALLQHRLGNMDTAKTLLFKCSLLKEPISESLLCLCALGLVHSDGTLATAA
LSELLKLSVEPGVAMEQRCLLTCALLALQGHYSAVPREAARAVHSHPGNASLWAFLSRLV
PQYHSRKANGGAVAGSVASLSSMTQGKRALLFSGLNQLAAGQHAGEDRTRNALKTMQRAV
LLCPDDLAAWAGVMAACYTENTACALSGSAPLRQGLERPLMAAIAEKAQAASAEERPLAH
AVEGWALQQALSGLRQAALYDQAEPLCTQVLSVSPDHPAVLLQLRQLQCERLLLEQPGIT
LPVAVLDQLSAAVMANPNSVSAWHWLAGLYFSQGLLAQASVAYRQSLQLASQLGHYSGKM
GSLLRLALLALTACMAKVPGSDWKNLVLEATTEARKLGPSPVALLLQALLQFSTKMEARE
TRRLLERLVYYALPDQPKTVSSVARWYLLRHLHAKDDLELMDKLAEQAKAAGDSRLLEFH
QQICPSA
NT seq
4704 nt
NT seq
+upstream
nt +downstream
nt
atgtccagcaaagaggtgaaggctgcactgaaaagtgcaagggaagccatcaaaaacaaa
gaatataaagaagcacttaaacattgcaagaatgttctgaagcttgagaagaacaactac
aatgcttgggtgttcattggagtggccgctggggagctggaacagccagaccaggcccag
gcggcgtacaagaaggccacagagcttgagtcagaccagttactggcatggcagggatta
gctaacctatatgagaagaaccgccagactgattttaagagcgaactcccagtggtttac
caaaaactcatcgcattgtatgaaagttcagacaaagtcaaatgccaagaggtgagcagg
aagctggtggacctccacctccaagagaaggactatttgcaggtggctcgcgtgtggcag
aggctgattcagctgcaggaggaaggcggggcggagcaggctgagcagctgcagctctgg
aaggagatgacgcaggtcctgcaggacagcgtggaggagcaggacaacgagaccctgcag
cacctcataactgcttttgagaaagccatgactctcacagaatctgctccttgtgaagac
cacaagaaactctccatggacttcatctcatgtctgtcaaagcttccacacgaagaagcc
aaactgaaagaggtctgcgaggccatgctgtttgcttacccctctcaaccattccccctg
gaagcactgtgctcacattaccttaagtcgggaacgtgcagtgaggaggctgtagactgc
ttcaggcgtctgctggagctggatgcaggcagcgggccagctctcctgtgcctgggagtc
aaggccctggaagagaagaagtatgaagacgccaccaagagcctgtctcagggattgaag
cggatgccctcctctgtggtgggctggtatagcttggcccagggtcatcttaagatgcat
aaatatacagatagtgccaagtcctgcactcaaggactccgctgttgtaaagacagcgac
acagagttgattcagaagttgcagaggctgaagttggagtctcttgtgaggactggtgca
gaaaacacacgtgatgaagcactggacacactgacccagatttgtgattccagcaaagat
cccgtcctgctatcttttaaaggcaagatctacttgcagaaaggcctaatcgatcaagca
ttagaggtatcttctgagctggaggcatcccaccctgactccgtggaaggcatgatcctg
aagggactcctccatcaggcacgagatgagctccaacaggcagaggagagtttccagaag
gccctttctctgtgcccagagtctggggagctctacttcctgttgggccagctctattgg
ctcatgggagaagaggcacgccgggatcggagtaaagcacacacgcacctcctcaaggct
gcgaagttggatccttacctgggctctgtgttccggcacctggggcactactaccgggag
gtggtcagagacctgggccgagcgcgggggtgctacaagcgggcgtttgagctggatggc
agtgatggcgaggcaggggcagcagcagtggacatcagcatggagcagggagacatggat
tctgccttggccattttgacgtcagtgactgagagagccacccctggatcagccaagtgg
gcctggatgaggagggggttgtatcatctcaagattagccagcaccagcaagcagtcaca
gatctgcaggcggccttgcgggcggaccctctggactgggtgtgctgggagtgtctgggc
gaggcctacctccaccgccacagcttcaccactgcgctcaaggccttcaccaaggcccac
ctgctgcggcccgactccatctacagcctctatcagatggccgctatcaagcagaccctg
ggcaagttcaaggaggcggccggagagtacatgaagattgttcagcgagaggactatgtg
cctgcgctaaaaggtcttggagagtgctctctcgctctggcccggagtgcactgggagac
tacctagatgggagggcagtggacttaattcaaagtgccattgaatacttgttcagagga
gtgcagcgccgtccagacctgtcgtgcctgtggaagctgctgggagatgcctgcagtctc
agtggtactgtggctccagagagagctcacgtgctggttccaggagccttgtcaggagac
ggctcgccagatcagaaccatcgcctggaccagaggacactgctgagactgggcgagagg
tgctatggaagagccctgaagctgatgccggaggctgccagcctgtggtgtgacctcggg
atcaactactaccgccagtgcctgaagctcctctccctcaaccaggagcaggaccttcag
atgcttctagaaaaatccgtgcagtgtattaagaaggcagtgatgctggacagtgacaat
tacagcttctggaatgccttgggcgtcgtttccatggtcacaggtcttgaaaactttgct
cttgcacagcactgtttcattaaatcagtgaaggtcgaaccaaataacgttgtagcctgg
accaacctgggtgtgctgtatctgaagaaagaaaaccttgagctttcccacgaggccttt
aaggttgcccagtctctagagccgttatatgtcaactgttggattggacaggctctgatt
gcagagatggtgggcagctatgacgccatggacctgttccgccacactacagagcttaac
acgcacactgaaggggtgaatggctatgcctgctgggtgtgctccacactgctggacaag
agtaacagggactctgagctgtaccgctacaacatcctccagatgaacgccacctctgcc
gcacaggtggccctctgcaagtacacagagaggattcagacagaccctagagcttttgtc
atgctggggtatctcaatgaacacctaaaactcaagaagcaggccgttgtggcctacagg
agagctgtggagcttctgcagtcctctcctcatgtagaggagctcaacttcgccctcagg
aactacggccgtgccctctgtgacacaggccagtgggaggaggctgtgcgcgtgtactcc
tccactccactggaggagctgcaggacctgacaggtctggccttggcctacttcagagca
ggcctcctgcaggaaagcctcagctcctatgagaaggcgctggcggtggcctccgctgag
agggagagagcctacatcttcactgcactggctctgctgcagcacagattgggcaacatg
gacacggccaagactctgctcttcaagtgttccctactgaaggagcccatatcggagagc
ctgctgtgcctgtgtgctctgggcttggtgcacagtgacggcacactggccaccgctgcg
ctctctgagctgctgaagctgagcgtggagcccggggtcgccatggagcagcgctgcctc
ctcacctgtgccctgctggcactgcagggccactacagcgctgtgcccagggaggctgcc
agggctgtgcatagtcacccaggaaacgcctccctctgggcttttctctcccgcctggtg
ccacagtaccactccagaaaagccaatggtggtgctgtagctggaagcgtggcgagtctc
tccagtatgacccaaggaaagagggcgctattgttcagtggtctgaatcagctggccgca
ggccaacatgcaggtgaagaccgcaccaggaatgccctgaagaccatgcagagagcggta
ctgttgtgtccagatgacttggcagcatgggccggggtaatggctgcttgctataccgag
aatactgcctgtgctctgtctggttctgcccctctcagacagggtctagagcgccctctg
atggccgccattgctgagaaagctcaggcagcgtctgccgaggagcggcccctggcccat
gctgtagagggctgggccctgcagcaggctctctcgggcctcagacaggccgcactctat
gaccaggcggaacctctgtgcactcaggtcctgagtgtgtcccctgaccaccctgcagtg
ctgctccagctgcgacagctgcagtgtgagcgcctcctactggagcagcctggaatcacg
ctgcctgtggccgtgctggaccagctctctgcagctgtgatggccaaccccaactcagtg
tctgcctggcattggttggcagggttgtatttctctcagggcctgctggcccaggcctct
gtggcatacaggcagagcctgcagctggcctctcagctgggtcactacagtgggaaaatg
ggtagcctgttgaggctggcgctactcgctctgaccgcctgtatggccaaagttccagga
agtgactggaagaacctggtcctggaagccaccacagaggcccggaaactgggtccctct
cctgttgcccttctgctccaggccctgcttcagttctccaccaagatggaggccagagaa
acccgtcgcttactggagaggcttgtttattacgcattgcctgaccagcctaaaactgtg
tcctctgttgcgcgttggtatcttctccgccatctccacgccaaagatgacctggagctc
atggataaactggcggaacaggccaaagctgctggagactccagactcctggagtttcac
caacagatctgcccatcagcctga
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integrated database retrieval system
