Clupea harengus (Atlantic herring): 105890039
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Entry
105890039 CDS
T09045
Symbol
top3b
Name
(RefSeq) DNA topoisomerase 3-beta-1
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03440
Homologous recombination
char03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
105890039 (top3b)
03460 Fanconi anemia pathway
105890039 (top3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
char03032
]
105890039 (top3b)
03400 DNA repair and recombination proteins [BR:
char03400
]
105890039 (top3b)
Enzymes [BR:
char01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
105890039 (top3b)
DNA replication proteins [BR:
char03032
]
Eukaryotic type
DNA Topoisomerases
105890039 (top3b)
DNA repair and recombination proteins [BR:
char03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
105890039 (top3b)
FA (Fanconi anemia) pathway
105890039 (top3b)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_TOP3B
Fer4_11
Motif
Other DBs
NCBI-GeneID:
105890039
NCBI-ProteinID:
XP_031426153
Ensembl:
ENSCHAG00000026088
UniProt:
A0A6P8FCB8
LinkDB
All DBs
Position
7:5964406..5970545
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AA seq
547 aa
AA seq
DB search
MGPQHTMQVAERLYIQGYISYPRTETTHYPENFDLKGTLRQQANNPFWADSVKALLAEGI
NRPRKGSDAGDHPPITPMRPASENELGSDGWRLYEFITRNFIATVSQDCKYLQTTITFSV
GTEGFSCSGKTLISAGFTEIMPWQGIPLEEALPVCERGDSFTVDEIKLLEKQTCPPDYLT
EAELITLMEKHGIGTDASIPVHINNVCQRNYVTVENGRRLKPTNLGIVLVHGYYKIDAEL
VLPTIRSAVEKQLTLIALGKANFQQVLQHTLDIFKRKFHYFVDSISGMDELMEVSFSPIA
DTGKPLSRCGKCHRFMKYIQAKPSRLHCSHCDDTYSLPQNGAIKLYKELRCPLDDFELVL
WTSGSRGKSYPVCPYCFGNPPFRDMKKGMGCNECTHPTCQHSLNSLGIGQCVECENGVLV
FDPTSGPKWRMACNKCNVVVHFFEHAHKVQVAADSCEACEASLVAVDFNKTRTPLPDGET
QHTGCVFCDAIFQDLVELKHATMRHPMHRGGGARRGGRGRGRGRRPGGRGNPKKPKDKMA
ALAAYFV
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
atgggccctcagcacaccatgcaagtggcagagaggctgtacatccagggctacatcagc
tacccccgcacggagaccacacactaccccgagaactttgacctgaaaggcacgctgaga
cagcaagccaacaaccccttctgggccgactccgttaaagccttgctcgcagagggcatc
aacagacccaggaaggggtcggatgcaggggatcatccccccatcacacccatgaggcct
gcttcagagaatgaacttggtagcgatggctggcgtttgtatgagtttatcactcggaac
ttcattgcgacagtcagccaagactgcaagtacctccagaccaccattacttttagcgtc
ggcaccgaaggcttctcctgtagtggcaaaactctcatatcagctggcttcacagagatc
atgccctggcagggtattcctctggaggaggcgcttcctgtgtgtgagaggggtgactcc
ttcactgtggacgagatcaagctgctggagaagcagacctgtcccccagactacctgact
gaagcagagctcatcacactcatggagaaacacggcatcggcactgatgccagcatccca
gtccacatcaataacgtctgccagaggaactacgtcacagtggaaaatggacgcaggctg
aagcctactaacctgggcatcgtgcttgtccatggctactacaaaattgatgcagagctg
gttttgccgaccattcgtagtgcagtggagaagcagctaaccctcatagctctgggcaaa
gccaatttccagcaggtgctccagcacactttagacatcttcaagaggaagttccactac
tttgtggactcaatttcaggtatggatgaattaatggaggtgtccttctcacccatcgcc
gatactgggaaacccctctcccgctgtgggaagtgccatcgtttcatgaaatacatccag
gccaagcccagtcggttgcactgctctcactgcgacgacacgtacagcttgccccagaac
ggagccatcaagctgtacaaggagctgcgctgcccgttggatgactttgagctggtgctc
tggacctctggctcgagggggaagagctaccccgtctgcccttattgcttcggtaacccc
cccttcagggatatgaagaaaggtatggggtgtaacgagtgcacccaccccacctgccag
cactctctgaactcgctgggcattggccagtgcgtggagtgcgagaatggcgtgctggtg
ttcgaccccacctcgggccccaagtggcgcatggcctgcaacaagtgcaacgtggtggtg
catttcttcgagcatgcccacaaagtgcaggtggctgcggacagctgcgaggcgtgcgag
gcctcgctggtggccgtggacttcaataagacgcgcacccccctgcccgacggcgagacg
cagcacacgggctgcgtgttctgcgatgccatcttccaggatctggttgagctcaagcat
gccaccatgaggcaccccatgcaccggggcggaggggcaaggagaggggggcggggaagg
ggtaggggtcgccgcccgggtgggagaggaaacccgaaaaaacccaaagacaaaatggct
gccctcgcagcatactttgtgtag
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